Literature DB >> 3309333

All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling.

J A Borowiec1, J D Gralla.   

Abstract

The supercoiling response of four closely related promoters was examined in vitro. It was found that changes in all three elements of the lac ps promoter, i.e. the -10 sequence, the -35 sequence, and the spacer length, alter the transcriptional response to DNA supercoiling. Thus, the promoter as a whole, not just the melted region, mediates the supercoiling response. It is proposed that DNA supercoiling changes the structure of the promoter DNA to a form that can be recognized by RNA polymerase and then easily melted. All four promoter variants tested show the same qualitative response to the introduction of DNA supercoiling; that is, transcription is increased compared to relaxed DNA. However, for three of the four promoters, the rate peaked at intermediate levels of supercoiling and declined at higher superhelicities. Each mutation was found to alter both the extent of stimulation that can be achieved and the amount of superhelicity associated with maximal stimulation. The trend is that the stronger promoters are stimulated less, and this maximal stimulation occurs on templates containing fewer superhelical turns. At the level of supercoiling that may pertain in vivo, changes in superhelicity would result in considerable differential changes in the strengths of these promoters.

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Year:  1987        PMID: 3309333     DOI: 10.1016/0022-2836(87)90329-9

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  44 in total

1.  An inactive open complex mediated by an UP element at Escherichia coli promoters.

Authors:  H Tagami; H Aiba
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

Authors:  Andrey Revyakin; Richard H Ebright; Terence R Strick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-22       Impact factor: 11.205

3.  Promoter selectivity of Escherichia coli RNA polymerase: effect of base substitutions in the promoter -35 region on promoter strength.

Authors:  M Kobayashi; K Nagata; A Ishihama
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

4.  Effect of the sequence-dependent structure of the 17 bp AT spacer on the strength of consensuslike E.coli promoters in vivo.

Authors:  T Lozinski; W T Markiewicz; T K Wyrzykiewicz; K L Wierzchowski
Journal:  Nucleic Acids Res       Date:  1989-05-25       Impact factor: 16.971

5.  In vivo DNA loops in araCBAD: size limits and helical repeat.

Authors:  D H Lee; R F Schleif
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

6.  Binding and transcription of relaxed DNA templates by fractions of maize chloroplast extracts.

Authors:  D Zaitlin; J Hu; L Bogorad
Journal:  Proc Natl Acad Sci U S A       Date:  1989-02       Impact factor: 11.205

7.  Mutations in the -10 TATAAT sequence of the gyrA promoter affect both promoter strength and sensitivity to DNA supercoiling.

Authors:  R Straney; R Krah; R Menzel
Journal:  J Bacteriol       Date:  1994-10       Impact factor: 3.490

8.  Supercoil-induced unusual DNA structures as transcriptional block.

Authors:  R Bagga; N Ramesh; S K Brahmachari
Journal:  Nucleic Acids Res       Date:  1990-06-11       Impact factor: 16.971

9.  Formation of (dA-dT)n cruciforms in Escherichia coli cells under different environmental conditions.

Authors:  A Dayn; S Malkhosyan; D Duzhy; V Lyamichev; Y Panchenko; S Mirkin
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

10.  Activation of the leu-500 promoter by adjacent transcription.

Authors:  J Tan; L Shu; H Y Wu
Journal:  J Bacteriol       Date:  1994-02       Impact factor: 3.490

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