Literature DB >> 33090076

Reconstructing human pancreatic islet architectures using computational optimization.

Gerardo J Félix-Martínez1,2, Aurelio N Mata2, J Rafael Godínez-Fernández2.   

Abstract

We outline a general methodology based on computational optimization and experimental data to reconstruct human pancreatic islet architectures. By using the nuclei coordinates of islet cells obtained through DAPI staining, cell types identified by immunostaining, and cell size distributions estimated from capacitance measurements, reconstructed islets composed of non-overlapping spherical cells were obtained through an iterative optimization procedure. In all cases, the reconstructed architectures included >99% of the experimental identified cells, each of them having a radius within the experimentally reported ranges. Given the wide use of mathematical modeling for the study of pancreatic cells, and recently, of cell-cell interactions within the pancreatic islets, the methodology here proposed, also capable of identifying cell-to-cell contacts, is aimed to provide with a framework for modeling and analyzing experimentally-based pancreatic islet architectures.

Entities:  

Keywords:  architecture; islets; modeling; optimization; pancreatic cells

Year:  2020        PMID: 33090076      PMCID: PMC7751670          DOI: 10.1080/19382014.2020.1823178

Source DB:  PubMed          Journal:  Islets        ISSN: 1938-2014            Impact factor:   2.694


  52 in total

1.  Modeling Ca(2+) currents and buffered diffusion of Ca(2+) in human β-cells during voltage clamp experiments.

Authors:  Gerardo J Félix-Martínez; J Rafael Godínez-Fernández
Journal:  Math Biosci       Date:  2015-10-20       Impact factor: 2.144

Review 2.  Regulation of islet glucagon secretion: Beyond calcium.

Authors:  Jing W Hughes; Alessandro Ustione; Zeno Lavagnino; David W Piston
Journal:  Diabetes Obes Metab       Date:  2018-09       Impact factor: 6.577

3.  Emergence of organized bursting in clusters of pancreatic beta-cells by channel sharing.

Authors:  A Sherman; J Rinzel; J Keizer
Journal:  Biophys J       Date:  1988-09       Impact factor: 4.033

4.  Role of single-channel stochastic noise on bursting clusters of pancreatic beta-cells.

Authors:  T R Chay; H S Kang
Journal:  Biophys J       Date:  1988-09       Impact factor: 4.033

5.  Modelling the electrical activity of pancreatic alpha-cells based on experimental data from intact mouse islets.

Authors:  Paul M Diderichsen; Sven O Göpel
Journal:  J Biol Phys       Date:  2006-11-09       Impact factor: 1.365

Review 6.  Paracrine interactions within islets of Langerhans.

Authors:  Duk-Su Koh; Jung-Hwa Cho; Liangyi Chen
Journal:  J Mol Neurosci       Date:  2012-04-13       Impact factor: 3.444

7.  Asymmetrical distribution of δ and PP cells in human pancreatic islets.

Authors:  Charlotte Barbieux; Géraldine Parnaud; Vanessa Lavallard; Estelle Brioudes; Jérémy Meyer; Mohamed Alibashe Ahmed; Ekaterine Berishvili; Thierry Berney; Domenico Bosco
Journal:  J Endocrinol       Date:  2016-03-01       Impact factor: 4.286

8.  Mathematical modeling of heterogeneous electrophysiological responses in human β-cells.

Authors:  Michela Riz; Matthias Braun; Morten Gram Pedersen
Journal:  PLoS Comput Biol       Date:  2014-01-02       Impact factor: 4.475

Review 9.  The somatostatin-secreting pancreatic δ-cell in health and disease.

Authors:  Patrik Rorsman; Mark O Huising
Journal:  Nat Rev Endocrinol       Date:  2018-07       Impact factor: 43.330

10.  δ-cells and β-cells are electrically coupled and regulate α-cell activity via somatostatin.

Authors:  L J B Briant; T M Reinbothe; I Spiliotis; C Miranda; B Rodriguez; P Rorsman
Journal:  J Physiol       Date:  2017-11-02       Impact factor: 5.182

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  5 in total

Review 1.  From Isles of Königsberg to Islets of Langerhans: Examining the Function of the Endocrine Pancreas Through Network Science.

Authors:  Andraž Stožer; Marko Šterk; Eva Paradiž Leitgeb; Rene Markovič; Maša Skelin Klemen; Cara E Ellis; Lidija Križančić Bombek; Jurij Dolenšek; Patrick E MacDonald; Marko Gosak
Journal:  Front Endocrinol (Lausanne)       Date:  2022-06-15       Impact factor: 6.055

2.  Comparative analysis of reconstructed architectures from mice and human islets.

Authors:  Gerardo J Félix-Martínez; J R Godínez-Fernández
Journal:  Islets       Date:  2021-10-22       Impact factor: 2.694

Review 3.  Determinants and dynamics of pancreatic islet architecture.

Authors:  Melissa T Adams; Barak Blum
Journal:  Islets       Date:  2022-12-31       Impact factor: 2.694

4.  Machine Learning Algorithms, Applied to Intact Islets of Langerhans, Demonstrate Significantly Enhanced Insulin Staining at the Capillary Interface of Human Pancreatic β Cells.

Authors:  Louise Cottle; Ian Gilroy; Kylie Deng; Thomas Loudovaris; Helen E Thomas; Anthony J Gill; Jaswinder S Samra; Melkam A Kebede; Jinman Kim; Peter Thorn
Journal:  Metabolites       Date:  2021-06-07

5.  IsletLab: an application to reconstruct and analyze islet architectures.

Authors:  Gerardo J Félix-Martínez
Journal:  Islets       Date:  2022-01-01       Impact factor: 2.694

  5 in total

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