| Literature DB >> 33088973 |
A Kazantseva1, Yu Davydova1, R Enikeeva1, M Lobaskova2, R Mustafin3, S Malykh2, Z Takhirova4, E Khusnutdinova1.
Abstract
BACKGROUND: Multiple studies of depression indicated a significant role of gene-by-environment interactions; however, they are mainly limited to the examination of modulating effect of recent stressful life events. Other environmental factors occurring at different stages of ante- and postnatal development may affect the association between multiple genes and depression. The study aimed to analyze the main and haplotype-based effect of serotonergic system and HPA-axis gene polymorphisms on depression and to detect gene-by-environment interaction models explaining individual variance in depression in mentally healthy young adults from Russia.Entities:
Keywords: Arginine vasopressin; Behavioral neuroscience; Biological psychiatry; Depression; Family environment; Genomics; GxE interaction; Human genetics; Mental disorder; Mental health; Molecular neuroscience; Oxytocin; Polymerase chain reaction; Psychological disorders; Serotonin
Year: 2020 PMID: 33088973 PMCID: PMC7567928 DOI: 10.1016/j.heliyon.2020.e05240
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
The investigated SNPs.
| Gene | SNP | Chromosomal position, bp | Location in gene | Minor allele/Major allele | Genotype frequency | PHWE | ||
|---|---|---|---|---|---|---|---|---|
| rs3803107 | 63147054 | 3′-UTR | A/G | 0.025 | 0.280 | 0.695 | 0.775 | |
| rs1042615 | 63150429 | exon 1 | A/G | 0.156 | 0.486 | 0.358 | 0.798 | |
| rs33911258 | 206118034 | 5′-UTR | G/A | 0.020 | 0.293 | 0.687 | 0.201 | |
| rs7632287 | 8749760 | 3′-UTR | A/G | 0.041 | 0.318 | 0.642 | 0.901 | |
| rs2254298 | 8760542 | intron 1 | A/G | 0.003 | 0.164 | 0.833 | 0.299 | |
| rs13316193 | 8761057 | intron 1 | C/T | 0.255 | 0.401 | 0.344 | <0.01 | |
| rs53576 | 8762685 | intron 1 | A/G | 0.213 | 0.498 | 0.290 | 1 | |
| rs2228485 | 8768017 | exon 1 | C/T | 0.042 | 0.283 | 0.674 | 0.149 | |
| rs237911 | 8768322 | 5′-UTR | G/A | 0.030 | 0.264 | 0.706 | 0.559 | |
| rs7322347 | 46835968 | intron 2 | A/T | 0.095 | 0.473 | 0.432 | 0.108 | |
| 5-HTTLPR (rs4795541) | 30237299 | 5′-UTR | L/S | 0.235 | 0.490 | 0.275 | 0.635 | |
| rs1042173 | 30197993 | 3′-UTR | T/G | 0.206 | 0.493 | 0.301 | 0.936 | |
according to NCBI36 genome build 36.3. PHWE – P-value for Hardy-Weinberg equilibrium test. UTR - untranslated region.
The sample structure according to examined socio-demographic parameters, mean depression score and Mann-Whitney U-test on depression score.
| Parameter | N (%) | Mean score ±SD | Mann-Whitney test (p) |
|---|---|---|---|
| Sex | |||
| Men | 118 (18.90) | 7.23 ± 6.62 | |
| Women | 505 (81.10) | 8.63 ± 6,98 | |
| Ethnicity | |||
| Russians | 225 (36.11) | 8.78 ± 7.71 | 0.814 |
| Tatars | 141 (22.63) | 6.61 ± 5.60 | |
| Udmurts | 218 (35.00) | 8.55 ± 6.36 | 0.134 |
| Others (mixed ethnicity) | 39 (6.26) | 11.54 ± 8.38 | 0.014 |
| Residence | |||
| Urban | 329 (52.81) | 8.28 ± 7.53 | 0.589 |
| Rural | 294 (47.19) | 8.03 ± 6.02 | |
| Order of birth | |||
| 1 | 367 (58.91) | 8.32 ± 7.01 | 0.976 |
| 2 | 195 (31.30) | 8.69 ± 6.65 | 0.123 |
| >3 | 61 (9.79) | 6.50 ± 6.44 | |
| Number of children in family | |||
| 1 | 130 (20.87) | 10.17 ± 8.20 | |
| 2 | 302 (48.47) | 7.41 ± 6.01 | 0.116 |
| >3 | 191 (30.66) | 7.88 ± 6.69 | 0.685 |
| Family income | |||
| lower than average | 78 (12.52) | 9.38 ± 8.41 | 0.379 |
| average | 503 (80.74) | 7.99 ± 6.59 | 0.322 |
| higher than average | 42 (6.74) | 8.09 ± 5.64 | 0.689 |
| Rearing in full family | |||
| yes | 510 (81.86) | 8.18 ± 6.78 | 0.974 |
| no | 113 (18.14) | 8.37 ± 7.06 | |
| Maltreatment | |||
| yes | 81 (13.00) | 10.58 ± 8.00 | |
| no | 542 (87.00) | 7.70 ± 6.74 | |
| Bilingual | |||
| yes | 326 (52.33) | 7.16 ± 5.61 | 0.498 |
| no | 297 (47.67) | 8.25 ± 7.48 | |
| Chronic disease | |||
| yes | 172 (27.61) | 9.27 ± 7.68 | |
| no | 451 (72.39) | 7.64 ± 6.64 | |
| Smoking | |||
| yes | 42 (6.74) | 9.22 ± 8.37 | 0.796 |
| previously | 58 (9.31) | 10.39 ± 8.42 | 0.064 |
| no | 523 (83.95) | 7.93 ± 6.49 | 0.096 |
| Maternal care | |||
| high | 452 (72.55) | 7.26 ± 6.10 | |
| low | 171 (27.45) | 11.48 ± 9.01 | |
| Maternal protection | |||
| high | 361 (57.95) | 9.39 ± 7.75 | |
| low | 262 (42.05) | 7.06 ± 6.28 | |
| Paternal care | |||
| high | 331 (53.13) | 7.41 ± 6.42 | |
| low | 292 (46.87) | 9.60 ± 7.87 | |
| Paternal protection | |||
| high | 282 (45.27) | 8.89 ± 8.23 | 0.854 |
| low | 341 (54.73) | 7.95 ± 6.15 | |
| Age (17–25 years) | 623 (100) | 19.53 ± 1.75 | |
| Weight (1500–4950 g) | 623 (100) | 3381 ± 533 | 0.863 |
| Mother Age (16–44 years) | 623 (100) | 25.61 ± 5.43 | 0.309 |
Mann-Whitney U-test was performed for dummy variables (one variable vs others) in the case of a number of categorical variables higher than 2.
Linear regression analysis was performed for quantitative data instead of non-parametric Mann-Whitney test. SD - standard deviation. Statistically significant P-values are marked in bold.
Main effect of examined SNPs on depression score in different groups based on linear regression analysis∗.
| Gene | SNP (MiA/MaA) | Model | Total (N = 623) | Women (N = 504) | Men (N = 117) | Russians (N = 225) | Udmurts (N = 218 | Tatars (N = 141) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| β | P-value | β | P-value | β | P-value | β | P-value | β | P-value | β | P-value | |||
| rs3803107 | dominant | 1.241 | 0.046 | 1.468 | 0.035 | 0.763 | 0.570 | 3.596 | -0.059 | 0.948 | 0.080 | 0.941 | ||
| rs1042615 | additive | -0.139 | 0.748 | 0.091 | 0.850 | -1.330 | 0.164 | -0.929 | 0.225 | 0.056 | 0.929 | -0.466 | 0.602 | |
| rs33911258 | domdev | 0.711 | 0.238 | 0.634 | 0.294 | 0.832 | 0.532 | 0.041 | 0.971 | 1.456 | 0.426 | 2.101 | 0.047 | |
| rs7632287 | additive | -0.013 | 0.980 | 0.199 | 0.728 | -0.544 | 0.588 | 0.030 | 0.973 | 0.027 | 0.981 | -1.177 | 0.180 | |
| rs2254298 | additive | -0.808 | 0.273 | -1.016 | 0.226 | 0.290 | 0.850 | -1.192 | 0.378 | -0.855 | 0.530 | 0.016 | 0.989 | |
| rs53576 | additive | -0.053 | 0.894 | 0.189 | 0.675 | -0.875 | 0.305 | -0.141 | 0.853 | 0.411 | 0.522 | 0.950 | 0.146 | |
| rs2228485 | dominant | -0.679 | 0.258 | -0.081 | 0.905 | -2.684 | 0.035 | -0.834 | 0.444 | -0.243 | 0.800 | -2.411 | 0.019 | |
| rs237911 | domdev | 0.498 | 0.427 | 0.459 | 0.465 | -2.055 | 0.131 | 3.419 | 0.085 | 0.224 | 0.882 | -2.141 | 0.048 | |
| rs7322347 | additive | 0.741 | 0.094 | 0.779 | 0.105 | 0.588 | 0.602 | 0.257 | 0.746 | 0.995 | 0.199 | 0.475 | 0.550 | |
| rs4795541 | recessive | 0.520 | 0.441 | -0.199 | 0.790 | 3.798 | 0.009 | 1.358 | 0.298 | 0.066 | 0.958 | -0.312 | 0.792 | |
| rs1042173 | additive | -0.069 | 0.863 | -0.023 | 0.957 | 0.588 | 0.602 | -0.218 | 0.767 | 0.308 | 0.662 | -0.734 | 0.248 | |
Sex, ethnicity and age were included as covariates in linear regression models.
SNP model (additive, dominant, recessive, or dominance deviation from additivity) best explaining variance in depression score (based on AIC criterion) is reported. In the case of non-significant association between SNP and depression level in any examined group the values for additive model are shown.
PFDR = 0.047. domdev - dominance deviation from additivity model (A1A2 vs A1A1+A2A2). MiA/MaA – Minor allele/major allele. Statistically significant P-values after FDR correction are marked in bold.
Haplotype frequencies in the AVPR1A gene (based on rs3803107 and rs1042615) and haplotype-based linear regression analysis in the examined groups.
| Group | N | Haplotype | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| G∗A | A∗G | G∗G | ||||||||
| Freq | β | P | Freq | β | P | Freq | β | P | ||
| Total | 623 | 0.394 | -0.21 | 0.628 | 0.163 | 1.23 | 0.439 | 0.55 | 0.206 | |
| Women | 504 | 0.364 | -1.33 | 0.164 | 0.206 | 0.58 | 0.612 | 0.430 | 1.00 | 0.313 |
| Men | 117 | 0.400 | -0.002 | 0.996 | 0.153 | 1.52 | 0.023 | 0.441 | -0.88 | 0.067 |
| Russians | 225 | 0.393 | -1.07 | 0.162 | 0.127 | 2.90 | 0.472 | -0.25 | 0.743 | |
| Udmurts | 218 | 0.401 | 0.09 | 0.881 | 0.219 | -0.002 | 0.998 | 0.379 | -0.09 | 0.879 |
| Tatars | 141 | 0.358 | -0.46 | 0.602 | 0.128 | 1.71 | 0.135 | 0.514 | -0.53 | 0.539 |
Statistically significant P-values before correction for multiple comparisons are marked in bold. Haplotypes with the frequencies less than 1% are not shown.
Figure 1The structure of the OXTR gene and association analysis of OXTR gene haplotypes (based on rs53576, rs2228485, rs237911) and depression level in healthy individuals. A. A schematic structure of the OXTR gene, examined SNPs and distance between them (kb). ∗rs13316193 was excluded from analysis due to deviation from the Hardy-Weinberg equilibrium. UTR – untranslated gene region. B. Haplotype frequencies of the OXTR gene in the examined groups (in total sample, women, men, individuals of Russian, Udmurt, and Tatar ethnic origin). 1 – rs53576, 2 – rs2228485, 3 – rs237911. Freq – haplotype frequency, P – P-value before correction for multiple comparisons. aR2 = 0.013, Pperm = 0.034, bR2 = 0.015, Pperm = 0.028. Statistically significant P-values after 10000 permutations are marked in bold. `Haplotypes with the frequencies less than 1% are not shown or marked with dashes. Constructed haplotype blocks of linked SNPs in the examined groups based on Lewontin's criterion (D′) are marked in triangles (Haploview v.4.2).
Significant multiple linear regression models (with GxE interaction) explaining variation in depression score controlled for sex and ethnicity.
| Items in linear regression model | Ref. group | Model 1 | Model 2 | Model 3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| β | T | β | T | β | T | |||||
| rs1042173 ( | T-allele | -0.16 | -0.08 | 0.936 | -0.72 | -1.12 | 0.263 | 1.00 | 0.37 | 0.710 |
| Sex | Women | 1.33 | 1.12 | 0.263 | 2.23 | 2.4 | 0.015 | 2.20 | 1.46 | 0.143 |
| Ethnicity | Russians | -0.41 | -0.37 | 0.706 | -1.65 | -1.60 | 0.109 | -1.15 | -0.62 | 0.530 |
| Tatars | -1.79 | -1.56 | 0.119 | -4.07 | -4.20 | <0.001 | -1.85 | -1.11 | 0.266 | |
| rs1042173 x sex | T∗women | 0.11 | 0.10 | 0.915 | - | - | - | -0.13 | -0.10 | 0.916 |
| rs1042173 x ethnicity | Russians | 0.17 | 0.18 | 0.855 | - | - | - | -0.68 | -0.40 | 0.683 |
| Tatars | -0.71 | -0.68 | 0.491 | - | - | - | -2.57 | -1.66 | 0.097 | |
| Sibship size | ≥3 | - | - | - | -3.01 | -2.17 | 0.030 | -2.76 | -1.90 | 0.057 |
| rs1042173 x sibship size | T∗≥3 | - | - | - | 2.89 | 2.39 | 2.66 | 2.05 | ||
| rs53576 (OXTR) | A-allele | -2.68 | -1.42 | 0.154 | 4.33 | 2.52 | 0.012 | 2.27 | 0.79 | 0.431 |
| Sex | Women | 0.28 | 0.23 | 0.815 | 1.05 | 1.10 | 0.270 | 0.28 | 0.18 | 0.855 |
| Ethnicity | Russians | -0.71 | -0.66 | 0.508 | -0.11 | -0.12 | 0.904 | -1.27 | -0.86 | 0.392 |
| Tatars | -3.97 | -3.18 | 0.001 | -3.13 | -3.35 | <0.001 | 1.09 | 0.84 | 0.404 | |
| rs53576 x sex | A∗women | 1.17 | 1.18 | 0.234 | - | - | - | 0.72 | 0.57 | 0.571 |
| rs53576 x ethnicity | Russians | 0.35 | 0.37 | 0.708 | - | - | - | 1.21 | 0.91 | 0.362 |
| Tatars | 1.53 | 1.48 | 0.139 | - | - | - | 1.09 | 0.83 | 0.404 | |
| Paternal care | High | - | - | - | 0.29 | 0.23 | 0.810 | 0.25 | 0.20 | 0.841 |
| rs53576 x paternal care | A∗high | - | - | - | -2.52 | -2.38 | -2.49 | -2.33 | ||
| rs237911 ( | G-allele | -3.45 | -1.55 | 0.121 | 0.55 | 0.79 | 0.427 | -1.99 | -0.78 | 0.435 |
| Sex | Women | 0.63 | 0.73 | 0.466 | 1.25 | 1.60 | 0.108 | 0.56 | 0.60 | 0.547 |
| Ethnicity | Russians | -0.62 | -0.80 | 0.423 | -0.06 | -0.09 | 0.925 | 0.12 | 0.14 | 0.886 |
| Tatars | -2.27 | -1.59 | 0.112 | -2.67 | -3.48 | <0.001 | -1.88 | -2.18 | 0.030 | |
| rs237911 x sex | G∗women | 2.18 | 1.73 | 0.084 | - | - | - | 2.04 | 1.46 | 0.144 |
| rs237911 x ethnicity | Russians | 0.83 | 0.68 | 0.494 | - | - | - | -0.87 | -0.63 | 0.526 |
| Tatars | -2.27 | -1.59 | 0.112 | - | - | - | -2.78 | -1.87 | 0.062 | |
| OB | 2 | - | - | - | 1.59 | 2.02 | 0.043 | 1.59 | 2.03 | 0.042 |
| rs237911 x OB | G∗2 | - | - | - | -2.74 | -2.15 | -2.71 | -2.12 | ||
| rs33911258 ( | G-allele | 0.80 | 0.28 | 0.778 | 0.16 | 0.26 | 0.790 | 0.82 | 0.27 | 0.789 |
| Sex | Women | 1.58 | 1.77 | 0.075 | 1.59 | 2.09 | 0.036 | 1.78 | 1.89 | 0.058 |
| Ethnicity | Russians | -0.13 | -0.16 | 0.866 | -0.36 | -0.51 | 0.603 | -0.37 | -0.44 | 0.659 |
| Tatars | -2.74 | -3.16 | 0.002 | -2.26 | -3.01 | 0.002 | -2.80 | -3.18 | 0.001 | |
| rs33911258 x sex | G∗women | -0.41 | -0.28 | 0.777 | - | - | - | -0.62 | -0.39 | 0.692 |
| rs33911258 x ethnicity | Russians | -0.27 | -0.22 | 0.823 | - | - | - | 0.06 | 0.04 | 0.961 |
| Tatars | 1.04 | 0.71 | 0.477 | - | - | - | 1.87 | 1.21 | 0.225 | |
| Smoking | Previous | - | - | - | 0.48 | 0.40 | 0.689 | 0.47 | 0.38 | 0.701 |
| rs33911258∗smoking | G∗previous | - | - | - | 5.87 | 2.70 | 6.13 | 2.78 | ||
Additive effect of SNPs on depression score is shown while controlled for sex and ethnicity (Models 1, 2, 3). Smoking – previous smoking. OB – order of birth. Ref. group – reference group. Statistically significant P-values after FDR-correction for GxE interaction are shown in bold. Ethnicity was encoded as a set of dummy variables for the inclusion in the models. The number of children higher than three in the family is included in the model. Previous smoking is included in the model.
Figure 2Stratification analysis demonstrating a modulating effect of level of paternal care - on association of OXTR rs53576 (A), birth order - on association of OXTR rs237911 (B) gene variants and individual differences in depression under GxE paradigm while controlling for sex and ethnicity. The charts demonstrate medians and standard deviations. Statistically significant differences in depression score between stratified groups detected in non-parametric models are marked by brackets. ∗PFDR < 0.05.