Literature DB >> 33087275

Dynamic action of DNA repair proteins as revealed by single molecule techniques: Seeing is believing.

Muwen Kong1, Emily C Beckwitt2, Bennett Van Houten3.   

Abstract

DNA repair is a highly dynamic process in which the actual damage recognition process occurs through an amazing dance between the DNA duplex containing the lesion and the DNA repair proteins. Single molecule investigations have revealed that DNA repair proteins solve the speed-stability paradox, of rapid search versus stable complex formation, by conformational changes induced in both the damaged DNA and the repair proteins. Using Rad4, XPA, PARP1, APE1, OGG1 and UV-DDB as examples, we have discovered how these repair proteins limit their travel on DNA, once a lesion is encountered through a process of anomalous diffusion. We have also observed how PARP1 and APE1, as well as UV-DDB and OGG1 or APE1, co-localize dynamically at sites near DNA damage. This review highlights how our group has greatly benefited from our productive collaborations with Sam Wilson's research group.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  APE1; Base excision repair; Nucleotide excision repair; OGG1; PARP1; Single molecule; UV-DDB; XPA; XPC

Mesh:

Substances:

Year:  2020        PMID: 33087275      PMCID: PMC7586736          DOI: 10.1016/j.dnarep.2020.102909

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  19 in total

Review 1.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

Review 2.  XPA gene, its product and biological roles.

Authors:  Ulrike Camenisch; Hanspeter Nägeli
Journal:  Adv Exp Med Biol       Date:  2008       Impact factor: 2.622

3.  Single-Molecule Methods for Nucleotide Excision Repair: Building a System to Watch Repair in Real Time.

Authors:  Muwen Kong; Emily C Beckwitt; Luke Springall; Neil M Kad; Bennett Van Houten
Journal:  Methods Enzymol       Date:  2017-05-31       Impact factor: 1.600

4.  PARP1 changes from three-dimensional DNA damage searching to one-dimensional diffusion after auto-PARylation or in the presence of APE1.

Authors:  Lili Liu; Muwen Kong; Natalie R Gassman; Bret D Freudenthal; Rajendra Prasad; Stephanie Zhen; Simon C Watkins; Samuel H Wilson; Bennett Van Houten
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971

Review 5.  Endogenous versus exogenous DNA adducts: their role in carcinogenesis, epidemiology, and risk assessment.

Authors:  James A Swenberg; Kun Lu; Benjamin C Moeller; Lina Gao; Patricia B Upton; Jun Nakamura; Thomas B Starr
Journal:  Toxicol Sci       Date:  2010-12-16       Impact factor: 4.849

Review 6.  Rad4 recognition-at-a-distance: Physical basis of conformation-specific anomalous diffusion of DNA repair proteins.

Authors:  Muwen Kong; Bennett Van Houten
Journal:  Prog Biophys Mol Biol       Date:  2016-12-08       Impact factor: 3.667

7.  Preferential binding of the xeroderma pigmentosum group A complementing protein to damaged DNA.

Authors:  C J Jones; R D Wood
Journal:  Biochemistry       Date:  1993-11-16       Impact factor: 3.162

8.  Recognition of DNA damage by the Rad4 nucleotide excision repair protein.

Authors:  Jung-Hyun Min; Nikola P Pavletich
Journal:  Nature       Date:  2007-09-19       Impact factor: 49.962

9.  Single molecule analysis reveals monomeric XPA bends DNA and undergoes episodic linear diffusion during damage search.

Authors:  Emily C Beckwitt; Sunbok Jang; Isadora Carnaval Detweiler; Jochen Kuper; Florian Sauer; Nina Simon; Johanna Bretzler; Simon C Watkins; Thomas Carell; Caroline Kisker; Bennett Van Houten
Journal:  Nat Commun       Date:  2020-03-13       Impact factor: 14.919

10.  Single-molecule visualization reveals the damage search mechanism for the human NER protein XPC-RAD23B.

Authors:  Na Young Cheon; Hyun-Suk Kim; Jung-Eun Yeo; Orlando D Schärer; Ja Yil Lee
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

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