Literature DB >> 33082149

Prediction models for covid-19 outcomes.

Matthew Sperrin1, Brian McMillan2.   

Abstract

Entities:  

Mesh:

Year:  2020        PMID: 33082149      PMCID: PMC8029651          DOI: 10.1136/bmj.m3777

Source DB:  PubMed          Journal:  BMJ        ISSN: 0959-8138


× No keyword cloud information.
Robust models that predict the prognosis of coronavirus 2019 (covid-19) are urgently needed to support decisions about shielding, hospital admission, treatment, and population level interventions. With cases increasing in the UK and elsewhere, and winter approaching, such models could have a rapid clinical impact. Two linked articles report on two newly developed covid-19 prediction models. QCOVID is a risk prediction model for covid-19 related mortality for use in the general population (doi:10.1136/bmj.m3731),1 whereas the 4C mortality score is for use on admission to hospital (doi:10.1136/bmj.m3339).2 Notably, these models are of higher quality than others published to date,3 having been developed using ample sample sizes,4 with generally appropriate modelling choices, and suitably internally validated and reported.5 6 Nevertheless, we sound a note of caution in their use. QCOVID predicts the risk of catching and dying from (or being admitted to hospital with) covid-19 in the general population.1 The authors rightly emphasise the fact that predicting separately either the probability of catching covid-19 or the probability of dying from it is not possible, owing primarily to incomplete knowledge of who actually has the disease. However, this conflation causes limitations in the model’s application. The risk of catching covid-19 depends on an individual’s behaviour and the local dynamics of the disease, which are not modelled by QCOVID. These dynamics, such as local disease prevalence, change rapidly. Therefore, calibration of the model is likely to deteriorate rapidly. Moreover, recent data show a shift in the age distribution of cases towards younger people; discrimination of the model may also drop, therefore, as age is a strong predictor. QCOVID is, however, described as a “living” model1; with regular updating, these problems can be mitigated.7 A further challenge is that the predictions made reflect interventions in place at the time the model was developed. A “low risk” prediction generated by the model might reflect active steps taken by similar people in the past to lower their risk, such as shielding. Therefore, using a low risk prediction to support a decision to return to work, for example, is problematic. Explicit separation of baseline risk factors and interventions can, in principle, be achieved through issuing counterfactual predictions, which provide a risk estimate assuming certain interventions.8 9 Of particular interest for decision making is the counterfactual prediction generated when no preventive measures (such as shielding) are taken.10 QCOVID might, with these caveats, be used to inform national guidelines on shielding and employment legislation regarding who can reasonably be required to remain in, or return to, specific work environments. Risk estimates from QCOVID could also inform discussions between clinicians and patients. If challenge trials of covid -19 treatments are to go ahead,11 QCOVID could help scientists to target recruitment and enable potential participants to make informed decisions about their risks from taking part. Should effective vaccines be developed, it could inform decisions about which groups should be prioritised. The 4C mortality score, calculated at hospital admission, predicts in-hospital mortality among patients with confirmed or likely covid-19.2 Here, the authors explicitly suggest that the model should be used for decision support, noting, for example, that “patients with a 4C mortality score falling within the low risk groups (mortality rate 1%) might be suitable for management in the community.” This does not account for the “treatment paradox”: these patients may seem to be at low risk because of the interventions that similar patients in the development cohort received in hospital.12 Again, counterfactual prediction modelling offers a potential solution.9 Furthermore, with patient management, and potentially the disease itself, changing rapidly, the 4C model must also be updated regularly.7 Some clinical scenarios exist in which these risk calculators are of limited value. Neither model would help community based clinicians to determine whether patients being video triaged should be seen in person or admitted to hospital. Greenhalgh et al have developed guiding principles,13 but much remains to be done. Future studies could assess the clinical and cost benefits of supplying patients at high risk with equipment to record their vital signs from home (pulse oximeters, blood pressure monitors, thermometers, and peak expiratory flow rate meters), as this could improve the discrimination of any risk assessment tools based on remote triage. To conclude, the 4C and QCOVID models are likely to be helpful and represent a step forward in the quality of prognosis models for covid-19. Given the rapidly changing nature of the disease and its management, we emphasise the need to update these models regularly and monitor their performance closely over time and space. Care must also be taken when interpreting the predictions generated by these models: they reflect the risk for a patient taking similar measures, and receiving similar care, to similar patients in the past, not the risk to a patient if no actions are taken. Improved data on incident cases of covid-19 will allow greater granularity in prediction. With these caveats, we support the continued validation and impact assessment of these models.
  11 in total

1.  Prediction models in obstetrics: understanding the treatment paradox and potential solutions to the threat it poses.

Authors:  F Cheong-See; J Allotey; N Marlin; B W Mol; E Schuit; G Ter Riet; R D Riley; Kgm Moons; K S Khan; S Thangaratinam
Journal:  BJOG       Date:  2016-01-25       Impact factor: 6.531

2.  Calculating the sample size required for developing a clinical prediction model.

Authors:  Richard D Riley; Joie Ensor; Kym I E Snell; Frank E Harrell; Glen P Martin; Johannes B Reitsma; Karel G M Moons; Gary Collins; Maarten van Smeden
Journal:  BMJ       Date:  2020-03-18

3.  Assessing the performance of prediction models: a framework for traditional and novel measures.

Authors:  Ewout W Steyerberg; Andrew J Vickers; Nancy R Cook; Thomas Gerds; Mithat Gonen; Nancy Obuchowski; Michael J Pencina; Michael W Kattan
Journal:  Epidemiology       Date:  2010-01       Impact factor: 4.822

4.  Prediction meets causal inference: the role of treatment in clinical prediction models.

Authors:  Nan van Geloven; Sonja A Swanson; Chava L Ramspek; Kim Luijken; Merel van Diepen; Tim P Morris; Rolf H H Groenwold; Hans C van Houwelingen; Hein Putter; Saskia le Cessie
Journal:  Eur J Epidemiol       Date:  2020-05-22       Impact factor: 8.082

Review 5.  Dynamic models to predict health outcomes: current status and methodological challenges.

Authors:  David A Jenkins; Matthew Sperrin; Glen P Martin; Niels Peek
Journal:  Diagn Progn Res       Date:  2018-12-18

6.  Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score.

Authors:  Stephen R Knight; Antonia Ho; Riinu Pius; Iain Buchan; Gail Carson; Thomas M Drake; Jake Dunning; Cameron J Fairfield; Carrol Gamble; Christopher A Green; Rishi Gupta; Sophie Halpin; Hayley E Hardwick; Karl A Holden; Peter W Horby; Clare Jackson; Kenneth A Mclean; Laura Merson; Jonathan S Nguyen-Van-Tam; Lisa Norman; Mahdad Noursadeghi; Piero L Olliaro; Mark G Pritchard; Clark D Russell; Catherine A Shaw; Aziz Sheikh; Tom Solomon; Cathie Sudlow; Olivia V Swann; Lance Cw Turtle; Peter Jm Openshaw; J Kenneth Baillie; Malcolm G Semple; Annemarie B Docherty; Ewen M Harrison
Journal:  BMJ       Date:  2020-09-09

7.  Counterfactual prediction is not only for causal inference.

Authors:  Barbra A Dickerman; Miguel A Hernán
Journal:  Eur J Epidemiol       Date:  2020-07       Impact factor: 8.082

8.  Using marginal structural models to adjust for treatment drop-in when developing clinical prediction models.

Authors:  Matthew Sperrin; Glen P Martin; Alexander Pate; Tjeerd Van Staa; Niels Peek; Iain Buchan
Journal:  Stat Med       Date:  2018-08-02       Impact factor: 2.373

9.  Living risk prediction algorithm (QCOVID) for risk of hospital admission and mortality from coronavirus 19 in adults: national derivation and validation cohort study.

Authors:  Ash K Clift; Carol A C Coupland; Ruth H Keogh; Karla Diaz-Ordaz; Elizabeth Williamson; Ewen M Harrison; Andrew Hayward; Harry Hemingway; Peter Horby; Nisha Mehta; Jonathan Benger; Kamlesh Khunti; David Spiegelhalter; Aziz Sheikh; Jonathan Valabhji; Ronan A Lyons; John Robson; Malcolm G Semple; Frank Kee; Peter Johnson; Susan Jebb; Tony Williams; Julia Hippisley-Cox
Journal:  BMJ       Date:  2020-10-20

10.  Prediction models for diagnosis and prognosis of covid-19: systematic review and critical appraisal

Authors:  Laure Wynants; Ben Van Calster; Gary S Collins; Richard D Riley; Georg Heinze; Ewoud Schuit; Marc M J Bonten; Darren L Dahly; Johanna A A Damen; Thomas P A Debray; Valentijn M T de Jong; Maarten De Vos; Paul Dhiman; Maria C Haller; Michael O Harhay; Liesbet Henckaerts; Pauline Heus; Michael Kammer; Nina Kreuzberger; Anna Lohmann; Kim Luijken; Jie Ma; Glen P Martin; David J McLernon; Constanza L Andaur Navarro; Johannes B Reitsma; Jamie C Sergeant; Chunhu Shi; Nicole Skoetz; Luc J M Smits; Kym I E Snell; Matthew Sperrin; René Spijker; Ewout W Steyerberg; Toshihiko Takada; Ioanna Tzoulaki; Sander M J van Kuijk; Bas van Bussel; Iwan C C van der Horst; Florien S van Royen; Jan Y Verbakel; Christine Wallisch; Jack Wilkinson; Robert Wolff; Lotty Hooft; Karel G M Moons; Maarten van Smeden
Journal:  BMJ       Date:  2020-04-07
View more
  11 in total

1.  General Severity of Illness Scoring Systems and COVID-19 Mortality Predictions: Is "Old Still Gold?"

Authors:  Suhail S Siddiqui; Rohit Patnaik; Atul P Kulkarni
Journal:  Indian J Crit Care Med       Date:  2022

2.  Machine learning approach to dynamic risk modeling of mortality in COVID-19: a UK Biobank study.

Authors:  Mohammad A Dabbah; Angus B Reed; Adam T C Booth; Arrash Yassaee; Aleksa Despotovic; Benjamin Klasmer; Emily Binning; Mert Aral; David Plans; Davide Morelli; Alain B Labrique; Diwakar Mohan
Journal:  Sci Rep       Date:  2021-08-19       Impact factor: 4.379

3.  COVID-19: Short term prediction model using daily incidence data.

Authors:  Hongwei Zhao; Naveed N Merchant; Alyssa McNulty; Tiffany A Radcliff; Murray J Cote; Rebecca S B Fischer; Huiyan Sang; Marcia G Ory
Journal:  PLoS One       Date:  2021-04-14       Impact factor: 3.240

4.  Predicting in-Hospital Mortality of Patients with COVID-19 Using Machine Learning Techniques.

Authors:  Fabiana Tezza; Giulia Lorenzoni; Danila Azzolina; Sofia Barbar; Lucia Anna Carmela Leone; Dario Gregori
Journal:  J Pers Med       Date:  2021-04-24

5.  Forecasting of the COVID-19 pandemic situation of Korea.

Authors:  Taewan Goo; Catherine Apio; Gyujin Heo; Doeun Lee; Jong Hyeok Lee; Jisun Lim; Kyulhee Han; Taesung Park
Journal:  Genomics Inform       Date:  2021-03-25

6.  Prospective validation of the 4C prognostic models for adults hospitalised with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol.

Authors:  Stephen R Knight; Rishi K Gupta; Antonia Ho; Riinu Pius; Iain Buchan; Gail Carson; Thomas M Drake; Jake Dunning; Cameron J Fairfield; Carrol Gamble; Christopher A Green; Sophie Halpin; Hayley E Hardwick; Karl A Holden; Peter W Horby; Clare Jackson; Kenneth A Mclean; Laura Merson; Jonathan S Nguyen-Van-Tam; Lisa Norman; Piero L Olliaro; Mark G Pritchard; Clark D Russell; Catherine A Shaw; Aziz Sheikh; Tom Solomon; Cathie Sudlow; Olivia V Swann; Lance C W Turtle; Peter J M Openshaw; J Kenneth Baillie; Annemarie Docherty; Malcolm G Semple; Mahdad Noursadeghi; Ewen M Harrison
Journal:  Thorax       Date:  2021-11-22       Impact factor: 9.102

7.  Effect of anakinra on mortality in patients with COVID-19: a systematic review and patient-level meta-analysis.

Authors:  Evdoxia Kyriazopoulou; Thomas Huet; Giulio Cavalli; Andrea Gori; Miltiades Kyprianou; Peter Pickkers; Jesper Eugen-Olsen; Mario Clerici; Francisco Veas; Gilles Chatellier; Gilles Kaplanski; Mihai G Netea; Emanuele Pontali; Marco Gattorno; Raphael Cauchois; Emma Kooistra; Matthijs Kox; Alessandra Bandera; Hélène Beaussier; Davide Mangioni; Lorenzo Dagna; Jos W M van der Meer; Evangelos J Giamarellos-Bourboulis; Gilles Hayem
Journal:  Lancet Rheumatol       Date:  2021-08-09

8.  Prediction model for the spread of the COVID-19 outbreak in the global environment.

Authors:  Ron S Hirschprung; Chen Hajaj
Journal:  Heliyon       Date:  2021-06-29

9.  Development and validation of a simplified risk score for the prediction of critical COVID-19 illness in newly diagnosed patients.

Authors:  Stanislas Werfel; Carolin E M Jakob; Stefan Borgmann; Jochen Schneider; Christoph Spinner; Maximilian Schons; Martin Hower; Kai Wille; Martina Haselberger; Hanno Heuzeroth; Maria M Rüthrich; Sebastian Dolff; Johanna Kessel; Uwe Heemann; Jörg J Vehreschild; Siegbert Rieg; Christoph Schmaderer
Journal:  J Med Virol       Date:  2021-08-10       Impact factor: 20.693

10.  Longitudinally monitored immune biomarkers predict the timing of COVID-19 outcomes.

Authors:  Gorka Lasso; Saad Khan; Stephanie A Allen; Margarette Mariano; Catalina Florez; Erika P Orner; Jose A Quiroz; Gregory Quevedo; Aldo Massimi; Aditi Hegde; Ariel S Wirchnianski; Robert H Bortz; Ryan J Malonis; George I Georgiev; Karen Tong; Natalia G Herrera; Nicholas C Morano; Scott J Garforth; Avinash Malaviya; Ahmed Khokhar; Ethan Laudermilch; M Eugenia Dieterle; J Maximilian Fels; Denise Haslwanter; Rohit K Jangra; Jason Barnhill; Steven C Almo; Kartik Chandran; Jonathan R Lai; Libusha Kelly; Johanna P Daily; Olivia Vergnolle
Journal:  PLoS Comput Biol       Date:  2022-01-18       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.