Literature DB >> 33079589

Recommendations for Reporting Machine Learning Analyses in Clinical Research.

Laura M Stevens1,2, Bobak J Mortazavi3, Rahul C Deo4, Lesley Curtis5, David P Kao1.   

Abstract

Use of machine learning (ML) in clinical research is growing steadily given the increasing availability of complex clinical data sets. ML presents important advantages in terms of predictive performance and identifying undiscovered subpopulations of patients with specific physiology and prognoses. Despite this popularity, many clinicians and researchers are not yet familiar with evaluating and interpreting ML analyses. Consequently, readers and peer-reviewers alike may either overestimate or underestimate the validity and credibility of an ML-based model. Conversely, ML experts without clinical experience may present details of the analysis that are too granular for a clinical readership to assess. Overwhelming evidence has shown poor reproducibility and reporting of ML models in clinical research suggesting the need for ML analyses to be presented in a clear, concise, and comprehensible manner to facilitate understanding and critical evaluation. We present a recommendation for transparent and structured reporting of ML analysis results specifically directed at clinical researchers. Furthermore, we provide a list of key reporting elements with examples that can be used as a template when preparing and submitting ML-based manuscripts for the same audience.

Entities:  

Keywords:  bioinformatics; machine learning; prognosis; report; reproducibility; research

Mesh:

Year:  2020        PMID: 33079589      PMCID: PMC8320533          DOI: 10.1161/CIRCOUTCOMES.120.006556

Source DB:  PubMed          Journal:  Circ Cardiovasc Qual Outcomes        ISSN: 1941-7713


  29 in total

1.  Analysis of Machine Learning Techniques for Heart Failure Readmissions.

Authors:  Bobak J Mortazavi; Nicholas S Downing; Emily M Bucholz; Kumar Dharmarajan; Ajay Manhapra; Shu-Xia Li; Sahand N Negahban; Harlan M Krumholz
Journal:  Circ Cardiovasc Qual Outcomes       Date:  2016-11-08

2.  Phenomapping for novel classification of heart failure with preserved ejection fraction.

Authors:  Sanjiv J Shah; Daniel H Katz; Senthil Selvaraj; Michael A Burke; Clyde W Yancy; Mihai Gheorghiade; Robert O Bonow; Chiang-Ching Huang; Rahul C Deo
Journal:  Circulation       Date:  2014-11-14       Impact factor: 29.690

3.  American Heart Association Precision Medicine Platform.

Authors:  Taha A Kass-Hout; Laura M Stevens; Jennifer L Hall
Journal:  Circulation       Date:  2018-02-13       Impact factor: 29.690

4.  Clinical implications of chronic heart failure phenotypes defined by cluster analysis.

Authors:  Tariq Ahmad; Michael J Pencina; Phillip J Schulte; Emily O'Brien; David J Whellan; Ileana L Piña; Dalane W Kitzman; Kerry L Lee; Christopher M O'Connor; G Michael Felker
Journal:  J Am Coll Cardiol       Date:  2014-10-21       Impact factor: 24.094

5.  Personalizing the Intensity of Blood Pressure Control: Modeling the Heterogeneity of Risks and Benefits From SPRINT (Systolic Blood Pressure Intervention Trial).

Authors:  Krishna K Patel; Suzanne V Arnold; Paul S Chan; Yuanyuan Tang; Yashashwi Pokharel; Philip G Jones; John A Spertus
Journal:  Circ Cardiovasc Qual Outcomes       Date:  2017-04

6.  Deep Learning for Prediction of Obstructive Disease From Fast Myocardial Perfusion SPECT: A Multicenter Study.

Authors:  Julian Betancur; Frederic Commandeur; Mahsaw Motlagh; Tali Sharir; Andrew J Einstein; Sabahat Bokhari; Mathews B Fish; Terrence D Ruddy; Philipp Kaufmann; Albert J Sinusas; Edward J Miller; Timothy M Bateman; Sharmila Dorbala; Marcelo Di Carli; Guido Germano; Yuka Otaki; Balaji K Tamarappoo; Damini Dey; Daniel S Berman; Piotr J Slomka
Journal:  JACC Cardiovasc Imaging       Date:  2018-03-14

7.  Characterization of subgroups of heart failure patients with preserved ejection fraction with possible implications for prognosis and treatment response.

Authors:  David P Kao; James D Lewsey; Inder S Anand; Barry M Massie; Michael R Zile; Peter E Carson; Robert S McKelvie; Michel Komajda; John J V McMurray; JoAnn Lindenfeld
Journal:  Eur J Heart Fail       Date:  2015-08-06       Impact factor: 15.534

8.  Congestive heart failure detection using random forest classifier.

Authors:  Zerina Masetic; Abdulhamit Subasi
Journal:  Comput Methods Programs Biomed       Date:  2016-03-21       Impact factor: 5.428

9.  Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records.

Authors:  Riccardo Miotto; Li Li; Brian A Kidd; Joel T Dudley
Journal:  Sci Rep       Date:  2016-05-17       Impact factor: 4.379

10.  Phenotype Instance Verification and Evaluation Tool (PIVET): A Scaled Phenotype Evidence Generation Framework Using Web-Based Medical Literature.

Authors:  Jette Henderson; Junyuan Ke; Joyce C Ho; Joydeep Ghosh; Byron C Wallace
Journal:  J Med Internet Res       Date:  2018-05-04       Impact factor: 5.428

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  22 in total

1.  How Can We Ensure Reproducibility and Clinical Translation of Machine Learning Applications in Laboratory Medicine?

Authors:  Shannon Haymond; Stephen R Master
Journal:  Clin Chem       Date:  2022-03-04       Impact factor: 8.327

Review 2.  Advances in Machine Learning Approaches to Heart Failure with Preserved Ejection Fraction.

Authors:  Faraz S Ahmad; Yuan Luo; Ramsey M Wehbe; James D Thomas; Sanjiv J Shah
Journal:  Heart Fail Clin       Date:  2022-03-04       Impact factor: 3.179

3.  Commentary: Automated Machine Learning Model Development for Intracranial Aneurysm Treatment Outcome Prediction: A Feasibility Study.

Authors:  Markus Huber; Markus M Luedi; Lukas Andereggen
Journal:  Front Neurol       Date:  2022-06-10       Impact factor: 4.086

4.  Analyzing historical and future acute neurosurgical demand using an AI-enabled predictive dashboard.

Authors:  Anand S Pandit; Arif H B Jalal; Ahmed K Toma; Parashkev Nachev
Journal:  Sci Rep       Date:  2022-05-09       Impact factor: 4.996

Review 5.  Guidelines and quality criteria for artificial intelligence-based prediction models in healthcare: a scoping review.

Authors:  Anne A H de Hond; Artuur M Leeuwenberg; Lotty Hooft; Ilse M J Kant; Steven W J Nijman; Hendrikus J A van Os; Jiska J Aardoom; Thomas P A Debray; Ewoud Schuit; Maarten van Smeden; Johannes B Reitsma; Ewout W Steyerberg; Niels H Chavannes; Karel G M Moons
Journal:  NPJ Digit Med       Date:  2022-01-10

6.  A Comparison among Different Machine Learning Pretest Approaches to Predict Stress-Induced Ischemia at PET/CT Myocardial Perfusion Imaging.

Authors:  Rosario Megna; Mario Petretta; Roberta Assante; Emilia Zampella; Carmela Nappi; Valeria Gaudieri; Teresa Mannarino; Adriana D'Antonio; Roberta Green; Valeria Cantoni; Parthiban Arumugam; Wanda Acampa; Alberto Cuocolo
Journal:  Comput Math Methods Med       Date:  2021-11-27       Impact factor: 2.238

7.  Machine Learning in Clinical Journals: Moving From Inscrutable to Informative.

Authors:  Karandeep Singh; Andrew L Beam; Brahmajee K Nallamothu
Journal:  Circ Cardiovasc Qual Outcomes       Date:  2020-10-14

Review 8.  Machine learning in vascular surgery: a systematic review and critical appraisal.

Authors:  Ben Li; Tiam Feridooni; Cesar Cuen-Ojeda; Teruko Kishibe; Charles de Mestral; Muhammad Mamdani; Mohammed Al-Omran
Journal:  NPJ Digit Med       Date:  2022-01-19

9.  Prognostic models of diabetic microvascular complications: a systematic review and meta-analysis.

Authors:  Sigit Ari Saputro; Oraluck Pattanaprateep; Anuchate Pattanateepapon; Swekshya Karmacharya; Ammarin Thakkinstian
Journal:  Syst Rev       Date:  2021-11-01

10.  Prediction and Clinically Important Factors of Acute Kidney Injury Non-recovery.

Authors:  Chien-Liang Liu; You-Lin Tain; Yun-Chun Lin; Chien-Ning Hsu
Journal:  Front Med (Lausanne)       Date:  2022-01-17
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