| Literature DB >> 33079036 |
Armin Spreco, Olle Eriksson, Örjan Dahlström, Benjamin John Cowling, Matthew Biggerstaff, Gunnar Ljunggren, Anna Jöud, Emanuel Istefan, Toomas Timpka.
Abstract
The timing of influenza case incidence during epidemics can differ between regions within nations and states. We conducted a prospective 10-year evaluation (January 2008-February 2019) of a local influenza nowcasting (short-term forecasting) method in 3 urban counties in Sweden with independent public health administrations by using routine health information system data. Detection-of-epidemic-start (detection), peak timing, and peak intensity were nowcasted. Detection displayed satisfactory performance in 2 of the 3 counties for all nonpandemic influenza seasons and in 6 of 9 seasons for the third county. Peak-timing prediction showed satisfactory performance from the influenza season 2011-12 onward. Peak-intensity prediction also was satisfactory for influenza seasons in 2 of the counties but poor in 1 county. Local influenza nowcasting was satisfactory for seasonal influenza in 2 of 3 counties. The less satisfactory performance in 1 of the study counties might be attributable to population mixing with a neighboring metropolitan area.Entities:
Keywords: Sweden; epidemiology; evaluation research; human influenza; infectious disease; influenza; modelling; respiratory diseases; respiratory infections; signal detection analysis; surveillance; vaccine-preventable diseases; viruses
Mesh:
Year: 2020 PMID: 33079036 PMCID: PMC7588521 DOI: 10.3201/eid2611.200448
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Three regions analyzed in study of nowcasting for influenza epidemics in local settings, Sweden. Black indicates Stockholm County, red West Gothia County, gray Scania County. Included in the map is the island Zeeland (Sjaelland) (which is neighboring to Scania County). Blue indicates the city of Copenhagen (population 2 million) (on the island in the left lower corner of the figure).
Figure 2Daily numbers of influenza-diagnosis cases per 100,000 population, January 1, 2008–February 28, 2019, in Stockholm County (upper graph), West Gothia County (middle graph), and Scania County (lower graph), Sweden.
Figure 3Daily numbers of telenursing calls attributable to fever (among children and adults) per 100,000 population, January 1, 2008–February 28, 2019, in West Gothia County (upper graph) and Scania County (lower graph), Sweden.
Performance of the detection algorithm displayed with alert thresholds updated by using data from previous nonpandemic influenza seasons in evaluation of nowcasting for detection and prediction of local influenza epidemics, Sweden, 2008–2019
| Influenza virus activity | Updated* alert threshold, cases/day/100,000 population† | Timeliness‡ | Start according to method | Actual start§ | Interpretation |
|---|---|---|---|---|---|
| 2008–09 A(H3N2), initial retrospective data | |||||
| Stockholm | 0.63 | ||||
| West Gothia | 0.73 | ||||
| Scania | 0.25 |
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| 2009 A(H1N1) | |||||
| Stockholm | 0.63 | −5 | 2009 Aug 24 | 2009 Aug 19 | Good |
| West Gothia | 0.73 | −6 | 2009 Sep 3 | 2009 Aug 28 | Good |
| Scania | 0.25 | 18 | 2009 Aug 13 | 2009 Aug 31 | Poor |
| 2010–11 A(H1N1) and B¶ | |||||
| Stockholm | 0.63 | −7 | 2010 Dec 30 | 2010 Dec 23 | Good |
| West Gothia | 0.73 | −12 | 2011 Jan 9 | 2010 Dec 28 | Poor |
| Scania | 0.25 | 2 | 2010 Dec 23 | 2010 Dec 25 | Excellent |
| 2011–12 A(H3N2) | |||||
| Stockholm | 0.59 | 2 | 2012 Jan 22 | 2012 Jan 24 | Excellent |
| West Gothia | 0.43 | 1 | 2012 Jan 31 | 2012 Feb 1 | Excellent |
| Scania | 0.27 | 23 | 2012 Jan 9 | 2012 Feb 1 | Poor |
| 2012–13 A(H3N2), A(H1N1), and B | |||||
| Stockholm | 0.51 | −6 | 2013 Jan 3 | 2012 Dec 28 | Good |
| West Gothia | 0.44 | 0 | 2012 Dec 29 | 2012 Dec 29 | Excellent |
| Scania | 0.28 | 0 | 2012 Dec 27 | 2012 Dec 27 | Excellent |
| 2013–14 A(H3N2), A(H1N1), and B | |||||
| Stockholm | 0.52 | 0 | 2014 Jan 30 | 2014 Jan 30 | Excellent |
| West Gothia | 0.37 | 1 | 2014 Jan 27 | 2014 Jan 28 | Excellent |
| Scania | 0.35 | 0 | 2014 Jan 28 | 2014 Jan 28 | Excellent |
| 2014–15 A(H3N2) and B | |||||
| Stockholm | 0.52 | −6 | 2015 Jan 13 | 2015 Jan 7 | Good |
| West Gothia | 0.39 | 0 | 2015 Jan 17 | 2015 Jan 17 | Excellent |
| Scania | 0.35 | 7 | 2015 Jan 16 | 2015 Jan 23 | Good |
| 2015–16 A(pH1N1) and B | |||||
| Stockholm | 0.52 | 0 | 2016 Jan 2 | 2016 Jan 2 | Excellent |
| West Gothia | 0.47 | 16 | 2015 Dec 28 | 2016 Jan 13 | Poor |
| Scania | 0.34 | 0 | 2015 Dec 16 | 2015 Dec 16 | Excellent |
| 2016–17 A(H3N2) | |||||
| Stockholm | 0.34 | −2 | 2016 Dec 1 | 2016 Nov 29 | Excellent |
| West Gothia | 0.31 | −2 | 2016 Dec 17 | 2016 Dec 15 | Excellent |
| Scania | 0.31 | 0 | 2016 Dec 10 | 2016 Dec 10 | Excellent |
| 2017–18 A(H3N2) and B | |||||
| Stockholm | 0.38 | 0 | 2017 Dec 12 | 2017 Dec 12 | Excellent |
| West Gothia | 0.44 | 4 | 2017 Dec 30 | 2018 Jan 3 | Good |
| Scania | 0.34 | 5 | 2017 Dec 22 | 2017 Dec 27 | Good |
| 2018–19 A(pH1N1) | |||||
| Stockholm | 0.36 | −7 | 2018 Dec 18 | 2018 Dec 5 | Good |
| West Gothia | 0.40 | −6 | 2018 Dec 28 | 2018 Dec 22 | Good |
| Scania | 0.34 | 5 | 2018 Dec 27 | 2019 Jan 1 | Good |
*Threshold updated after every seasonal influenza (i.e., no updates after pandemic outbreaks). †Threshold determined using clinical influenza-diagnosis data. ‡Positive value means that the algorithm issued an alarm before the local epidemic had started; negative value means that the alarm was raised after the start of the epidemic. §Actual start is the date when the retrospectively calculated intensity level reached the predefined threshold for start of an epidemic (6.3 influenza-diagnosis cases/100,000 population recorded during a floating 7-day period) (,). ¶No update of threshold before this seasonal influenza because the previous outbreak was a pandemic.
Performance of peak-timing and peak-intensity predictions from evaluation of nowcasting for detection and prediction of local influenza epidemics, Sweden, 2008–2019
| Influenza virus activity | Time-to-peak* | Peak-intensity category, cases/day/100,000 population†§ | ||||||
|---|---|---|---|---|---|---|---|---|
| Prediction date | Predicted | Error | Interpretation | Predicted | Factual | Interpretation | ||
| 2009 A(H1N1) | ||||||||
| Stockholm | 2009 Sep 13 | 8 | 56 | Poor | Medium (5.0) | Very high (12.4) | Poor | |
| West Gothia | 2009 Sep 13 | 8 | 56 | Poor | Low (2.2) | Very high (13.7) | Poor | |
| Scania | 2009 Sep 25 | 10 | 42 | Poor |
| Low (1.4) | High (6.4) | Poor |
| 2010–11 A(H1N1) and B | ||||||||
| Stockholm | 2011 Jan 14 | 10 | 28 | Poor | Medium (3.4) | Medium (3.5) | Excellent | |
| West Gothia | 2011 Jan 14 | 10 | 14 | Poor | Medium (4.3) | High (6.1) | Tolerable | |
| Scania | 2011 Jan 10 | 11 | 22 | Poor |
| Medium (2.9) | High (5.5) | Poor |
| 2011–12 A(H3N2) | ||||||||
| Stockholm | 2012 Feb 27 | 8 | −8 | Tolerable | High (7.4) | Very high (9.4) | Good | |
| West Gothia | 2012 Feb 27 | 8 | −8 | Tolerable | High (7.8) | Very high (9.6) | Good | |
| Scania | 2012 Feb 27 | 8 | −8 | Tolerable |
| Medium (4.0) | High (6.8) | Poor |
| 2012–13 A(H3N2), A(H1N1), and B | ||||||||
| Stockholm | 2013 Feb 10 | 8 | −7 | Good | Very high (10.3) | Very high (12.2) | Excellent | |
| West Gothia | 2013 Feb 10 | 8 | −7 | Good | Very high (10.3) | Very high (11.9) | Excellent | |
| Scania | 2019 Feb 8 | 10 | −7 | Good |
| High (7.3) | Very high (10.7) | Good |
| 2013–14 A(H3N2), A(H1N1), and B | ||||||||
| Stockholm | 2014 Feb 16 | 8 | −7 | Good | Medium (2.7) | Medium (3.0) | Excellent | |
| West Gothia | 2014 Feb 16 | 8 | −7 | Good | Medium (3.5) | Medium (2.9) | Excellent | |
| Scania | 2014 Feb 17 | 8 | −1 | Excellent |
| Medium (3.2) | Medium (4.2) | Excellent |
| 2014–15 A(H3N2) and B | ||||||||
| Stockholm | 2015 Feb 22 | 8 | 6 | Good | Medium (4.5) | High (6.5) | Tolerable | |
| West Gothia | 2015 Feb 22 | 8 | 6 | Good | Very high (7.9) | Very high (8.3) | Excellent | |
| Scania | 2015 Feb 14 | 9 | 0 | Excellent |
| Medium (3.9) | Very high (8.1) | Poor |
| 2015–16 A(H1N1) and B | ||||||||
| Stockholm | 2016 Feb 7 | 8 | 0 | Excellent | High (6.7) | Very high (8.2) | Tolerable | |
| West Gothia | 2016 Feb 7 | 8 | 7 | Good | High (7.6) | Very high (11.6) | Good | |
| Scania | 2016 Feb 6 | 9 | 7 | Good |
| Medium (4.3) | Very high (10.4) | Poor |
| 2016–17 A(H3N2) | ||||||||
| Stockholm | 2017 Jan 1 | 8 | −7 | Good | Very high (8.2) | High (6.8) | Good | |
| West Gothia | 2017 Feb 12 | 8 | 7 | Good | Medium (3.3) | Medium (3.7) | Excellent | |
| Scania | 2017 Feb 5 | 8 | 14 | Poor |
| Medium (4.2) | Medium (5.1) | Excellent |
| 2017–18 A(H3N2) and B | ||||||||
| Stockholm | 2018 Feb 18 | 8 | −7 | Good | Very high (14.4) | Very high (11.6) | Excellent | |
| West Gothia | 2018 Feb 18 | 8 | 0 | Excellent | Medium (5.2) | High (5.9) | Good | |
| Scania | 2018 Feb 4 | 8 | 14 | Poor |
| Medium (4.2) | Very high (14.0) | Poor |
| 2018–19 A(H1N1) | ||||||||
| Stockholm | 2019 Feb 3 | 8 | 0 | Excellent | Very high (14.4) | High (6.2) | Poor | |
| West Gothia | 2019 Feb 3 | 8 | 7 | Good | Medium (4.0) | Medium (3.4) | Excellent | |
| Scania | 2019 Feb 3 | 8 | −7 | Good | Medium (2.8) | Medium (5.2) | Excellent | |
*Time-to-peak (days) determined using syndromic telenursing data. Positive value means that the peak was predicted to be reached before the actual peak occurs, whereas negative value means that the peak is predicted after the actual peak occurs. †Peak-intensity category determined using clinical influenza-diagnosis data. §Using clinical influenza data (Table 1), the start of the epidemic was detected on December 27. On February 1, using syndromic data, the peak in clinical influenza data was forecasted to occur 8 days later (February 9), but the peak actually occurred on February 2 (7 days earlier than forecasted). Also, on February 1, the clinical influenza data intensity was forecasted to be high.