Literature DB >> 33074544

Transcriptomic Analysis in the Sea Anemone Nematostella vectensis.

Jacob F Warner1,2, Eric Röttinger3.   

Abstract

The sea anemone Nematostella vectensis is an emerging research model to study embryonic development and regeneration at the molecular and global transcriptomic level. Transcriptomics analysis is now routinely used to detect differential expression at the genome level. Here we present the latest procedures for isolating high-quality RNA required for next generation sequencing, as well as methods and resources for quantifying transcriptomic data.

Entities:  

Keywords:  Cnidarian; De novo assembly; Nematostella vectensis; RNA isolation; transcriptome

Mesh：

Substances：

Year:  2021        PMID： 33074544     DOI： 10.1007/978-1-0716-0974-3_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  23 in total

1.  Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.

Authors:  Nicholas H Putnam; Mansi Srivastava; Uffe Hellsten; Bill Dirks; Jarrod Chapman; Asaf Salamov; Astrid Terry; Harris Shapiro; Erika Lindquist; Vladimir V Kapitonov; Jerzy Jurka; Grigory Genikhovich; Igor V Grigoriev; Susan M Lucas; Robert E Steele; John R Finnerty; Ulrich Technau; Mark Q Martindale; Daniel S Rokhsar
Journal:  Science       Date:  2007-07-06       Impact factor: 47.728

2.  FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis.

Authors:  Fabian Rentzsch; Jens H Fritzenwanker; Corinna B Scholz; Ulrich Technau
Journal:  Development       Date:  2008-05       Impact factor: 6.868

3.  The Culture, Sexual and Asexual Reproduction, and Growth of the Sea Anemone Nematostella vectensis.

Authors:  C Hand; K R Uhlinger
Journal:  Biol Bull       Date:  1992-04       Impact factor: 1.818

4.  A staging system for the regeneration of a polyp from the aboral physa of the anthozoan Cnidarian Nematostella vectensis.

Authors:  Patricia E Bossert; Matthew P Dunn; Gerald H Thomsen
Journal:  Dev Dyn       Date:  2013-10-07       Impact factor: 3.780

5.  Microinjection of mRNA or morpholinos for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis.

Authors:  Michael J Layden; Eric Röttinger; Francis S Wolenski; Thomas D Gilmore; Mark Q Martindale
Journal:  Nat Protoc       Date:  2013-04-11       Impact factor: 13.491

6.  Cas9-mediated excision of Nematostella brachyury disrupts endoderm development, pharynx formation and oral-aboral patterning.

Authors:  Marc D Servetnick; Bailey Steinworth; Leslie S Babonis; David Simmons; Miguel Salinas-Saavedra; Mark Q Martindale
Journal:  Development       Date:  2017-07-13       Impact factor: 6.868

7.  A framework for the establishment of a cnidarian gene regulatory network for "endomesoderm" specification: the inputs of ß-catenin/TCF signaling.

Authors:  Eric Röttinger; Paul Dahlin; Mark Q Martindale
Journal:  PLoS Genet       Date:  2012-12-27       Impact factor: 5.917

8.  Characterization of Morphological and Cellular Events Underlying Oral Regeneration in the Sea Anemone, Nematostella vectensis.

Authors:  Aldine R Amiel; Hereroa T Johnston; Karine Nedoncelle; Jacob F Warner; Solène Ferreira; Eric Röttinger
Journal:  Int J Mol Sci       Date:  2015-12-01       Impact factor: 5.923

9.  Evolutionary conservation of the eumetazoan gene regulatory landscape.

Authors:  Michaela Schwaiger; Anna Schönauer; André F Rendeiro; Carina Pribitzer; Alexandra Schauer; Anna F Gilles; Johannes B Schinko; Eduard Renfer; David Fredman; Ulrich Technau
Journal:  Genome Res       Date:  2014-03-18       Impact factor: 9.043

10.  Pre-bilaterian origin of the blastoporal axial organizer.

Authors:  Yulia Kraus; Andy Aman; Ulrich Technau; Grigory Genikhovich
Journal:  Nat Commun       Date:  2016-05-27       Impact factor: 14.919
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