Literature DB >> 33073576

Quasi-Static Two-Dimensional Infrared Spectra of the Carboxyhemoglobin Subsystem under Electric Fields: A Theoretical Study.

Hai Chao Ren1,2, Lin Xiang Ji3, Tu Nan Chen4, Jiao Nan Yuan5, Yao Yao Huang2, Dong-Qing Wei6,7, Guang Fu Ji2, Zeng Ming Zhang1.   

Abstract

There is no doubt that electric fields of a specific frequency and intensity could excite certain vibrational modes of a macromolecule, which alters its mode coupling and conformation. Motivated by recent experiments and theories, we study the mode coupling between the Fe-CO mode and CO-stretch mode and vibration energy transfer among the active site and proteins in carboxyhemoglobin (HbCO) under different electric fields using the quasi-static two-dimensional infrared spectra. This study uses iron-porphyrin-imidazole-CO and two distal histidines in HbCO as the subsystem. The potential energy and dipole moment surfaces of the subsystem are calculated using an all-electron ab initio (B3LYP-D3(BJ)) method with the basis set Lanl2dz for the Fe atom and 6-31G(d,p) for C, H, O, and N atoms. Although the subsystem is reduced dimensionally, the anharmonic frequency and anharmonicity of the CO-stretch mode show excellent agreement with experimental values. We use the revealing noncovalent interaction method to confirm the hydrogen bond between the Hε atom of the His63 and the CO molecule. Our study confirms that the mode coupling between the Fe-CO mode and CO-stretch mode does not exist when the subsystem is free of electric field perturbation, which is coupled when the electric field is -0.5142 V/nm. In addition, with the increases of distance between the active site and the His92, there is no vibrational energy transfer between them when the electric field is 1.028 V/nm. We believe that our work could provide new ideas for increasing the dissociation efficiency of the Fe-CO bond and theoretical references for experimental research.

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Year:  2020        PMID: 33073576     DOI: 10.1021/acs.jpcb.0c06251

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  2 in total

1.  Intermolecular Vibration Energy Transfer Process in Two CL-20-Based Cocrystals Theoretically Revealed by Two-Dimensional Infrared Spectra.

Authors:  Hai-Chao Ren; Lin-Xiang Ji; Tu-Nan Chen; Xian-Zhen Jia; Rui-Peng Liu; Xiu-Qing Zhang; Dong-Qing Wei; Xiao-Feng Wang; Guang-Fu Ji
Journal:  Molecules       Date:  2022-03-26       Impact factor: 4.411

2.  Revealing the Relationship between Electric Fields and the Conformation of Oxytocin Using Quasi-Static Amide-I Two-Dimensional Infrared Spectra.

Authors:  Hai-Chao Ren; Lin-Xiang Ji; Tu-Nan Chen; Yong-Gang Liu; Rui-Peng Liu; Dong-Qing Wei; Xian-Zhen Jia; Guang-Fu Ji
Journal:  ACS Omega       Date:  2022-01-19
  2 in total

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