Literature DB >> 33072825

Genome sequencing data for wild and cultivated bananas, plantains and abacá.

Christine Sambles1, Lakshmipriya Venkatesan1, Olanrewaju M Shittu1, James Harrison1, Karen Moore1, Leena Tripathi2, Murray Grant3, Rachel Warmington4, David J Studholme1.   

Abstract

We performed shotgun genome sequencing on a total of 19 different Musa genotypes including representatives of wild banana species Musa acuminata and M. balibisiana, allopolyploid bananas and plantains, Fe'i banana, pink banana (also known as hairy banana) and abacá (also known as hemp banana). We aligned sequence reads against a previously sequenced reference genome and assessed ploidy and, in the case of allopolyploids, the contributions of the A and B genomes; this provides important quality-assurance data about the taxonomic identities of the sequenced plant material. These data will be useful for phylogenetics, crop improvement, studies of the complex story of intergenomic recombination in AAB and ABB allotriploid bananas and plantains and can be integrated into resources such as the Banana Genome Hub.
© 2020 The Author(s).

Entities:  

Keywords:  DNA; Diversity; Genome; Musa; Plant; Sequence analysis

Year:  2020        PMID: 33072825      PMCID: PMC7549061          DOI: 10.1016/j.dib.2020.106341

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


  12 in total

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5.  Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods.

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Journal:  Plant Methods       Date:  2018-08-13       Impact factor: 4.993

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Journal:  Database (Oxford)       Date:  2013-05-23       Impact factor: 3.451

10.  nQuire: a statistical framework for ploidy estimation using next generation sequencing.

Authors:  Clemens L Weiß; Marina Pais; Liliana M Cano; Sophien Kamoun; Hernán A Burbano
Journal:  BMC Bioinformatics       Date:  2018-04-04       Impact factor: 3.169

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  1 in total

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Journal:  Genes (Basel)       Date:  2021-08-02       Impact factor: 4.096

  1 in total

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