| Literature DB >> 33072093 |
Narasimha M Beeraka1, Surya P Sadhu2, SubbaRao V Madhunapantula1,3, Rajeswara Rao Pragada2, Andrey A Svistunov4, Vladimir N Nikolenko4,5, Liudmila M Mikhaleva6, Gjumrakch Aliev6,7,8,9.
Abstract
Severe Acute Respiratory Syndrome-Corona Virus-2 (Entities:
Keywords: COVID-19; NSMIs; SARS-CoV; SARS-CoV-2; natural Nrf-2 modulators
Mesh:
Substances:
Year: 2020 PMID: 33072093 PMCID: PMC7531039 DOI: 10.3389/fimmu.2020.552925
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 7.561
Recent statistics of SARS-CoV2 infection—Top 10 countries.
| United States of America | 2.064 (0.623) | 0.800 (38.79) | 115,115 (5.57) |
| Brazil | 0.772 (0.363) | 0.380 (49.23) | 39,680 (5.13) |
| Russia | 0.493 (0.338) | 0.252 (51.20) | 6,358 (1.28) |
| United Kingdom | 0.290 (0.427) | 0.135 (46.52) | 41,128 (14.17) |
| Spain | 0.289 (0.618) | Not available | 27,136 (9.37) |
| India | 0.287 (0.020) | 0.140 (49.09) | 8,107 (2.82) |
| Italy | 0.235 (0.389) | 0.169 (72.08) | 34,114 (14.46) |
| Peru | 0.208 (0.633) | 0.098 (46.94) | 5,903 (2.82) |
| Germany | 0.186 (0.22) | 0.170 (91.34) | 8,844 (4.73) |
| Iran | 0.177 (0.212) | 0.140 (79.01) | 8,506 (4.78) |
Percentage of total population.
Percentage of total infected cases.
Percentage of total infected cases.
List of top 10 countries in the world affected with COVID-19.
Figure 1The schematic representation of SARS-CoV-2 structure: SARS-CoV-2 has a size ranging from 60 to 140 nm, and is a spherical to elliptical shaped virus with a crown-like appearance; it consists of a single-stranded RNA genome, a Spike protein (S), a Matrix protein (M), a nucleoprotein (N), and an Envelope-protein (E).
Structure and probable mechanism of action of NSMIs against SARS-CoV-2.
| SiRNA | Targets Orf7a required for viral assembly (or) Targets Orf7b (or) Targets Orf3a required for viral budding and release Note: SiRNA is yet to be examined against SARS-CoV-2 infection | – | ( |
| GRL0617 | Targets non-structural proteins nsp3 (Papain like proteinase) Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| Benzodioxolane derivatives | Targets non-structural proteins nsp3 (Papain like proteinase) in coronavirus Note: Yet to be examined against SARS-CoV-2 infection | 1-[(R)-1-(1-Naphthyl)ethyl]-4-[3,4- (methylenedioxy) benzylamino] carbonylpiperidine1-[(S)-1-(1-naphthyl) ethyl]-4-[3,4-(methylenedioxy)benzylamino] carbonylpiperidine | ( |
| 5-chloropyridinyl indolecarboxylate | Targets non-structural proteins nsp5 (3C-like main protease in SARS coronavirus) required for replicase synthesis Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| 2978/10 humanized antibodies | Mitigate SARS-CoV infection by targeting virus-neutralizing epitopes | – | ( |
| Amiodarone | Targets SARS-CoV by inhibiting endosomal processing in host cells Note: Clinical Trials are at Recruiting Stage to test against SARS-CoV-2 infection—NCT04351763 | ( | |
| Arbidol | Targets S-protein of SARS-CoV and prevent viral fusion Note: Clinical Trials are at Recruiting Stage to test against SARS-CoV-2 infection -NCT04255017 | ( | |
| TSL-1 | Targets SARS-CoV replication Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| TACE inhibitor (TAPI-2) | Blocks SARS-CoV replication in lungs Blocks ACE2 shedding Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| IFN—α B/D | Blocks SARS-CoV replication in lungs | ( | |
| IFN-β and-γ | Blocks SARS-CoV replication in lungs Note: Completed Clinical Trials for Interferon Beta-1A and Interferon Beta-1B -NCT04343768 Clinical Trials are at Recruiting Stage to test against SARS-CoV-2 infection-NCT04324463; NCT04350281 (IFN-β) | ( | |
| Camostat | TMPRSS2 serine protease Inhibitor in SARS-CoV-2 infection Note: Clinical Trials are at Recruiting stage to test against SARS-CoV-2 infection—NCT04321096 | ( | |
| Nafamostat | TMPRSS2 serine protease Inhibitor in SARS-CoV-2 virus Note: Yet to be examined against SARS-CoV-2 infection in clinical trials | ||
| Pegylated IFN-α | Blocks SARS-CoV replication in lungs Note: Yet to be examined against SARS-CoV-2 infection | – | ( |
| Remdesivir | Effective against SARS-CoV-2 infection | ( | |
| Lopinavir | Predicted to block SARS-CoV-2 Mpro (Molecular docking studies) Note: Clinical Trials are at Recruiting stage to test against SARS-CoV-2 infection-NCT04364022 | ( | |
| Nelfinavir | Predicted to block SARS-CoV-2 Mpro (Molecular docking studies) | ( | |
| Tocilizumab | Block SARS-CoV-2 viral induced cytokine storm—IL-6 receptor-targeted monoclonal antibody (mAb) (Ongoing clinical trials in China and Italy)—ChiCTR2000029765; NCT04377750; NCT04377659 | – | |
| SSAA09E1[[(Z)-1-thiophen-2-ylethylideneamino]thiourea] | Blocks cathepsin L required for SARS-CoV processing Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| SSAA09E2N-[[4-(4-methylpiperazin-1-yl)phenyl]methyl]-1,2-oxazole-5-carboxamide | Blocks SARS-CoV interaction with ACE-2 Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| SSAA09E3[N-(9,10-dioxo-9,10-dihydroanthracen-2-yl)benzamide] | Blocks SARS-CoV fusion to host cell membrane Note: Yet to be examined against SARS-CoV-2 infection | ( |
NCT numbers were obtained from .
Figure 2Molecular pathogenesis of SARS-CoV-2 in human lung cells. Binding of S-protein of SARS-CoV-2 to the ACE-2 receptors triggers the processing of ACE-2 through ADAM-17/TNF-α-converting enzyme and induces the “ACE-2 shedding” into the extracellular space and facilitates uptake of SARS-CoV-2 followed by the development of SARS. Alternatively, the entry of SARS-CoV-2 by membrane TMPRSS2 serine protease'/HAT (Human Airway Trypsin-like protease)-mediated cleavage of ACE2 can facilitate SARS-CoV S-glycoprotein-mediated virus entry. Even though, several NSMIs targeting these processes were described and their mode of action against coronavirus were delineated, their efficacy against SARS-CoV-2 is yet to be tested.
Ongoing clinical trials against SARS-CoV2 using MAPKinase Inhibitors.
| Trametinib | Inhibits MAPK/ERK—kinase family proteins viz. | ( | Ongoing |
| Everolimus | Inhibits PI3K/Akt/mTOR | ( | Ongoing |
| Dasatinib | Inhibition of actin motility | ( | Ongoing |
| PD98059 | MEK inhibitor | ( | – |
| Chloroquine (NCT04351724) | Inhibits p38 MAPK activation and blocks viral replication | ( | Ongoing |
Mechanism of action.
Structure and mechanism of action of naturally occurring Nrf2 modulators.
| EGCG | Inhibits viral replication of influenza A/Bangkok/1/79 infection in lung cells Inhibits Tat-induced HIV-1 infection | A polyphenol-Dried leaves of green tea | ( |
| SFN | Inhibits viral replication by enhancing expression of Nrf-2 expression, and antiviral mediators viz., RIG-1, IFN-β, and MxA. | Isothiocyanate—cruciferous vegetables | ( |
| α-luminol (monosodium α-luminol) | Inhibits MoMuL virus | Chemical synthesis | ( |
| Tanshinone IIA | Inhibits Tat-induced HIV-1 via Nrf-2 upregulation | ( | |
| Lucidone | Inhibits Dengue virus HCV (Hepatitis C Virus) growth | ( | |
| Celastrol (quinone methide triterpene) | Inhibits Tat-induced HIV-1 infection | ( | |
| Bakuchiol (phenolic isoprenoid) | Inhibits | ( | |
| Rupestonic acid (sesquiterpene) | Inhibits | ( | |
| Curcumin | Inhibits | ( |
Structure and mechanism of action of NSMIs identified against SARS-CoV2 using molecular docking studies.
| Baicalin (a flavonoid) | Predicted to exhibit a capacity for binding to ACE-2 for inducing anti-SARS-CoV-2 effects | ( | |
| Scutellarin (a flavone glycoside) | Predicted to exhibit a capacity for binding to ACE-2 to induce anti-SARS-CoV-2 effects | ( | |
| Nicotianamine | Predicted to exhibit a capacity for binding to ACE-2 to induce anti-SARS-CoV-2 effects | Leaves of | ( |
| Glycyrrhizin | Predicted to exhibit a capacity for binding to ACE-2 to induce anti-SARS-CoV-2 effects Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| Hesperetin glycoside | Potent inhibitor of SARS-CoV 3CLpro Note: Yet to be examined against SARS-CoV-2 infection | ( | |
| Naringenin | Binds to ACE-2, a receptor for SARS-CoV-2 | ( | |
| Betulinic acid | Competitively inhibits SARS-CoV 3CL protease | ( | |
| Griffithsin | Binds to the SARS-CoV spike (S) -protein and inhibit viral entry | ( | |
| Savinin | Competitively inhibits SARS-CoV 3CL protease | A Lignan from | ( |
| Quercetin | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | ( | |
| Kaempferol | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | ( | |
| Allicin | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | Garlic | ( |
| Gingerol | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | Ginger | ( |
| Catechin | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | Green tea | ( |
| Epicatechingallate | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | ( | |
| Curcumin | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | ( | |
| Apigenin-7- glucoside | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | ( | |
| Luteolin-7- glucoside | Predicted to inhibit SARS-CoV-2 6LU7 Main protease (Mpro) | Leaves of | ( |