| Literature DB >> 33064728 |
Hana Krismawati1, Astrid Irwanto2,3,4, Arry Pongtiku5, Ishak Darryl Irwan2, Yustinus Maladan1, Yuli Arisanti Sitanggang1, Tri Wahyuni1, Ratna Tanjung1, Yonghu Sun6, Hong Liu6, Furen Zhang6, Antonius Oktavian1, Jianjun Liu2,7.
Abstract
Leprosy is a stigmatizing, chronic infection which degenerates the nervous system and often leads to incapacitation. Multi-drug therapy which consists of dapsone, rifampicin and clofazimine has been effective to combat this disease. In Indonesia, especially in Papua Island, leprosy is still a problem. Furthermore, there had been higher reports of Dapsone Hypersensitivity Syndrome (DHS) which also challenges leprosy elimination in certain aspects. Globally, DHS has a prevalence rate of 1.4% and a fatality rate up to 13%. The aim of this study is to validate HLA-B*13:01, a previously discovered biomarker for DHS in the Chinese population, as a biomarker for DHS in the Papua population.This is a case-control study of 34 leprosy patients who presented themselves with DHS (case subjects) and 52 leprosy patients without DHS (control subjects). Patients were recruited from 2 provinces: Papua and West Papua. DNA was extracted from 3 ml blood specimens. HLA-B alleles were typed using the gold-standard sequence based typing method. Results were then analysed using logistic regression and risk assessment was carried out. The results of HLA-typing showed that HLA-B*13:01 was the most significant allele associated with DHS, with odds ratio = 233.64 and P-value = 7.11×10-9, confirming the strong association of HLA-B*13:01 to DHS in the Papua population. The sensitivity of this biomarker is 91.2% and specificity is 96.2%, with an area under the curve of 0.95. HLA-B*13:01 is validated as a biomarker for DHS in leprosy patients in Papua, Indonesia, and can potentially be a good predictor of DHS to help prevent this condition in the future.Entities:
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Year: 2020 PMID: 33064728 PMCID: PMC7592909 DOI: 10.1371/journal.pntd.0008746
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Fig 1Power estimated for various allele frequencies and effect sizes.
Baseline characteristics of cases and controls.
| Characteristic | Controls (n = 52) | Cases (n = 34) | Total (n = 86) | P-value |
|---|---|---|---|---|
| Age (mean ± SD) | 25.3 ± 10.1 | 25.0 ± 11.1 | 25.1 ± 10.5 | 0.900 |
| Gender (n; %) | ||||
| Male | 31 (59.6) | 23 (67.6) | 54 (62.8) | 0.450 |
| Female | 21 (40.4) | 11 (32.4) | 32 (37.2) | |
| Male/Female Ratio | 1.47 | 2.09 | N/A | |
| Geographical Region (n; %) | ||||
| Papua | 24 (46.2) | 20 (58.8) | 44 (51.2) | 0.251 |
| West Papua | 28 (53.8) | 14 (41.2) | 42 (48.8) |
Allele frequency spectrum of Papua population.
| AF controls (n = 52) | AF cases (n = 34) | AF ALL (n = 86) | P-value (unadjusted) | OR (95% CI) (unadjusted) | P-value (adjusted for covariates | OR (95% CI) (adjusted for covariates) | |
|---|---|---|---|---|---|---|---|
| 15:02 | 0 | 0.015 | 0.006 | 0.991 | |||
| 15:06 | 0.094 | 0 | 0.058 | 0.084 | |||
| 15:12 | 0.009 | 0 | 0.006 | 0.991 | |||
| 15:21 | 0.160 | 0.061 | 0.122 | 0.150 | |||
| 15:25 | 0 | 0.015 | 0.006 | 0.992 | |||
| 15:195 | 0.009 | 0 | 0.006 | 0.990 | |||
| 18:01 | 0.160 | 0.091 | 0.134 | 0.099 | |||
| 18:02 | 0 | 0.015 | 0.006 | 0.991 | |||
| 18:105 | 0 | 0.015 | 0.006 | 0.991 | |||
| 27:04 | 0.038 | 0 | 0.023 | 0.989 | |||
| 27:06 | 0.019 | 0 | 0.012 | 0.992 | |||
| 35:01 | 0 | 0.015 | 0.006 | 0.991 | |||
| 35:05 | 0.038 | 0.015 | 0.029 | 0.404 | |||
| 35:30 | 0.009 | 0 | 0.006 | 0.992 | |||
| 38:02 | 0.132 | 0.030 | 0.093 | 0.046 | |||
| 38:46 | 0 | 0.015 | 0.006 | 0.991 | |||
| 39:01 | 0 | 0.015 | 0.006 | 0.991 | |||
| 40:01 | 0.057 | 0.076 | 0.064 | 0.893 | |||
| 40:02 | 0.028 | 0 | 0.017 | 0.991 | |||
| 40:10 | 0.009 | 0.030 | 0.017 | 0.323 | |||
| 40:11 | 0.009 | 0 | 0.006 | 0.992 | |||
| 40:89 | 0.009 | 0 | 0.006 | 0.992 | |||
| 40:99 | 0.009 | 0 | 0.006 | 0.992 | |||
| 40:143 | 0.009 | 0 | 0.006 | 0.992 | |||
| 48:01 | 0.009 | 0.061 | 0.029 | 0.084 | |||
| 56:01 | 0.066 | 0 | 0.041 | 0.991 | |||
| 56:02 | 0.009 | 0 | 0.006 | 0.992 | |||
| 56:07 | 0.075 | 0.030 | 0.058 | 0.224 | |||
| 58:59 | 0.009 | 0 | 0.006 | 0.992 |
*covariates include age, gender, geographical region.
AF, allele frequency. Considering Bonferroni correction for testing of 30 HLA-B alleles, the P-value for significance is P<0.0016.
Allele and genotype frequencies of HLA-B*13:01 and the Hardy Weinberg P-Values in cases and controls.
| Non-carrier | Carriers | Total carriers | Allele frequency | HWE P-value | ||
|---|---|---|---|---|---|---|
| Heterozygous | Homozygous | |||||
| 3 (8.82%) | 28 (82.35%) | 3 (8.82%) | 31 (91.17%) | 50% | 0.00039 | |
| 50 (96.15%) | 2 (3.85%) | 0 (0%) | 2 (3.85%) | 1.92% | 1 | |
Fig 2Receiver-operating curve for an additive prediction model of DHS using HLA-B*13:01 allele as predictor in Papuans.
AUC, area under the curve. Overall sensitivity is 91.2% and specificity is 96.2%.