Karolina Olszewska1, Izabella Jastrzebska2, Andrzej Łapiński3, Marcin Górecki4, Rosa Santillan5, Norberto Farfán6, Tomasz Runka1. 1. Faculty of Materials Engineering and Technical Physics, Poznan University of Technology, Piotrowo 3, 60-965 Poznań, Poland. 2. Faculty of Chemistry, University of Białystok, Ciołkowskiego 1K, 15-254 Białystok, Poland. 3. Institute of Molecular Physics, Polish Academy of Sciences, Smoluchowskiego 17, 60-179 Poznań, Poland. 4. Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland. 5. Departamento de Química, Centro de Investigación y de Estudios Avanzados del IPN, México D.F. Apdo. Postal 14-740, 07000, Mexico. 6. Facultad de Química, Departamento de Química Orgánica, Universidad Nacional Autónoma de México, 04510 Ciudad de México D.F., Mexico.
Abstract
Properly designed molecular rotors with sizable stators and a fast-moving rotator could provide efficient building blocks for amphidynamic crystals. Herein, we report the synthesis of steroidal compounds 1, 2, and 3 and their deuterated analogues 1D, 2D, and 3D envisioned to work as molecular rotors. The obtained compounds were characterized by attenuated total reflection-infrared, Raman, and circular dichroism (CD) spectroscopy measurements. The interpretation of spectra was supported by theoretical calculations using density functional theory methods. The analysis of the most characteristic bands confirmed different molecular dynamics of the rotors investigated. Angle-dependent polarized Raman spectra showed the crystallinity of some samples. Electronic CD (ECD) spectra of compounds 1-3 and their relevant deuterated analogues 1D-3D are identical. The increase of the band intensity with lowering the temperature shows that the equilibrium is shifted to the thermodynamically most stable conformer. ECD spectra simulated at the TDFFT level of theory for compound 3 were compared with experimental results. It was proved that conformer 3a, with a torsion angle of +50°, exhibits the best agreement with the experimental results. Simulated vibrational CD and IR spectra for conformer 3a and its deuterated analogue 3Da also display good agreement with experimental results. In light of our comprehensive investigations, we evidenced that steroidal compounds 1, 2, and 3 can work as molecular rotors.
Properly designed molecular rotors with sizable stators and a fast-moving rotator could provide efficient building blocks for amphidynamic crystals. Herein, we report the synthesis of steroidal compounds 1, 2, and 3 and their deuterated analogues 1D, 2D, and 3D envisioned to work as molecular rotors. The obtained compounds were characterized by attenuated total reflection-infrared, Raman, and circular dichroism (CD) spectroscopy measurements. The interpretation of spectra was supported by theoretical calculations using density functional theory methods. The analysis of the most characteristic bands confirmed different molecular dynamics of the rotors investigated. Angle-dependent polarized Raman spectra showed the crystallinity of some samples. Electronic CD (ECD) spectra of compounds 1-3 and their relevant deuterated analogues 1D-3D are identical. The increase of the band intensity with lowering the temperature shows that the equilibrium is shifted to the thermodynamically most stable conformer. ECD spectra simulated at the TDFFT level of theory for compound 3 were compared with experimental results. It was proved that conformer 3a, with a torsion angle of +50°, exhibits the best agreement with the experimental results. Simulated vibrational CD and IR spectra for conformer 3a and its deuterated analogue 3Da also display good agreement with experimental results. In light of our comprehensive investigations, we evidenced that steroidal compounds 1, 2, and 3 can work as molecular rotors.
In recent years, outlook on how a molecular machine is perceived
has changed drastically. In early research, a molecular machine was
primarily described as an isolated molecular system, created in the
image of molecular motors one can find in a living cell.[1,2] Nowadays, the definition of what a molecular machine is has been
extended to include linear,[3] planar,[4] and three-dimensional assemblies. Amid those,
solid-state molecular machines are considered as ideal candidates
for the development of new functional materials.[5] Furthermore, among crystalline molecular machines, a group
of amphidynamic crystals is an especially promising one. By that term,
we understand a broad group of molecular crystals that contain highly
mobile components inside rigid crystal frames.[6] Those crystals are assemblies of molecules called rotors. A rotor,
as shown in Figure , consists of three components: the stator, whose role is to create
a rigid frame; the rotator, responsible for movement inside the assembly;
and the axle of rotation.
Figure 1
Schematic illustration of the molecular rotor
and the structure
of the cyclic molecular rotor based on a 1,4-diethynylphenylene rotator.[7]
Schematic illustration of the molecular rotor
and the structure
of the cyclic molecular rotor based on a 1,4-diethynylphenylene rotator.[7]As stated by Catalano
and Naumov, in order to harness useful functionality,
those constructs must fulfill three main design principles.[8] Primarily, they must contain free space around
moving components in order to facilitate the movement of the rotator.
This can be achieved by numerous means, for example, by introducing
massive, steroid-based stators and additional bridging chains connecting
them.[7,9] Second, they must contain a volume conserving
rotator, which translates into a requirement of high rotational symmetry.
Third, the motion of rotators must be correlated. Different amphidynamic
crystals that satisfy these conditions can find application in numerous
measurement techniques based on the modulation of the rotator rotation
because of the interaction with the environment in which the rotor,
or crystal, is being placed. Thus, they can find application as molecular
sensors,[10] gas storage systems,[11] or gas separation modules.[12] If placed in intracellular surroundings, they can act as
viscosity sensors.[13] It has also been shown
that they can provide tunable and switchable dielectrics.[14,15]In this paper, we present the synthesis and vibrational and
circular
dichroism (CD) spectroscopy characterization of two types of molecular
rotors, with steroidal stators and 1,4-diethynylphenylene and 1,4-diethynylphenylene-d4 groups as a rotator. These compounds were
selected based on the similarities and differences between parts of
the rotor molecules in order to compare the molecular dynamics and
answer the question of which single C–C bond in the rotator
is responsible for the rotation (Figure ). With the conferred spectroscopic study,
we will endeavor to solve the problem connected with motion in steroidal
molecular rotors.
Figure 2
Proposed bonds responsible for rotation in the rotator.
Proposed bonds responsible for rotation in the rotator.
Materials and Methods
Synthesis of the Materials
Treatment
of steroid 1A with ethynyl magnesium chloride in dry
tetrahydrofuran at 0 °C provided alkyne 1B. Then,
acetylation with Ac2O in pyridine was performed. Dimers 1 (1,4-bis[17α-ethynyl-5α-androstane-3β,17β-diacetate]-benzene)
and 1D (1,4-bis[17α-ethynyl-5α-androstane-3β,17β-diacetate]-benzene-d4) were obtained by Sonogashira cross-coupling
between alkene B and 1,4-diiodobenzene or 2,3,5,6-tetradeuterium-1,4-diiodobenzene
in the presence of Pd(Ph3)2Cl2, as
outlined in Scheme . The structure of compound 1 and 1D was
established by 1H, 13C NMR, attenuated total
reflection-infrared (ATR-IR), and high-resolution mass spectrometry
(HRMS). Compound 2 and 2D were obtained
according to the described protocol.[16] Structures
of compounds 2 and 2D are presented in Figure , connected with
the motion in steroidal molecular rotors.
Scheme 1
Synthesis of Rotors 1 and 1D
Figure 3
Structures of rotors 2 and 2D.
Structures of rotors 2 and 2D.Dimer 3 (1,4-bis[4-estren-17α-ethynyl-18a-homo-17β-ol-3-one]-benzene) and 3D (1,4-bis[4-estren-17α-ethynyl-18a-homo-17β-ol-3-one]-benzene-d4) were obtained in the same manner as rotors 1 and 1D (see Scheme ). Compound 3 was proved to be identical
to that described by Santillan et al.[17] The structure of compound 3D was established by 1H, 13C NMR, ATR-IR, and HRMS.
Scheme 2
Synthesis of Dimer 3 and 3D
Density Functional Theory Calculations
The dynamics of selected molecular rotors were simulated with the
use of Gaussian03[18] and Gaussian16.[19] Density functional theory (DFT) calculations
using a B3LYP/6-31G(d) basis set were carried out for an isolated
molecule of rotor 3 (Figure ) on the basis of structural data from the
CIF file arising from X-ray analysis reported by Santillan et al.[17] In order to select a molecule for the optimization
process, structural data analysis was performed using Olex2 crystallography software.
Figure 4
Model of the molecule of rotor 3.[17]
Model of the molecule of rotor 3.[17]This method is a hybrid DFT approach that combines the Becke’s
three-parameter nonlocal exchange potential with the Lee–Yang–Parr
nonlocal correlation functional.[20,21] The frequencies
obtained as a result of the calculations were multiplied by a uniform
factor of 0.961 in order to eliminate systematic errors related to
anharmonicity.[22,23] For the calculation performed,
Raman intensity was calculated from scattering activities using the
procedure described by Sun et al.[24] The
data were calculated for an appropriate temperature of 20 °C
and excitation wavelength of 785 nm. The band assignment was performed
by the visual inspection of the individual modes with the use of the
GaussView 5 program.[25] The input structures
for CD study of 3 and 3D were found by performing
conformational searches and the optimizations of the conformers obtained.
Final optimizations were run at the B3LYP/6-311+G(d,p) level, including
the PCM solvation model for CH3CN [in the case of electronic
CD (ECD)] and CHCl3 [vibrational CD (VCD)] resulted in
one stable conformation. Time-dependent-DFT calculations were run
with functional CAM-B3LYP and def2-TZVP basis sets, including a PCM
for CH3CN. This selection was inspired based on our previous
study on steroid-based compounds.[26−29] All spectra were generated using
the program SpecDis.[30]
ATR-IR Spectroscopy
A Bruker Equinox
55 FTIR spectrometer equipped with a Gateway 6 reflection horizontal
ATR system, a deuterated triglycine sulfate detector, and a KBr beam
splitter was used for spectral acquisition. The ATR accessory consisted
of an optical unit and a top plate assembly with a 45° angle
zinc selenide (ZnSe) crystal that allowed the measurement of liquids
and solids. All spectra were recorded in the range of 4000–600
cm–1 using the ATR method with a resolution of 2
cm–1 and 2500 scans.
Raman
Spectroscopy
The Raman spectra
of nonoriented samples of molecular rotors 1, 2, and 3 and deuterated 1D, 2D, and 3D compounds were recorded using a Renishaw inVia
Raman microscope equipped with a thermoelectrically—cooled
charge-coupled device detector and near IR laser working at 785 nm
wavelengths. The Raman spectra were recorded in the spectral range
100–3200 cm–1 with a spectral resolution
better than 2 cm–1. To avoid sample overheating,
the power of the laser beam was kept below 10 mW. The position of
Raman peaks was calibrated before collecting the data using a crystalline
silicon sample as an internal standard. The spectral parameters of
the bands were determined using the fitting package of Wire 3.4 software.
CD Spectroscopy
All experimental
ECD spectra were carried out using a J-815 spectrometer (Jasco, Tokyo,
Japan) at room temperature in spectroscopic grade CH3CN
in a quartz cell with path lengths of 1 and 0.1 cm for a solution
with a concentration of 0.28–0.30 mM. All spectra were measured
using a scanning speed of 100 nm min–1, a step size
of 0.2 nm, a band width of 2 nm, and accumulation of five scans. The
spectra were background-corrected using spectra of solvents. Additionally,
for compound 3, variable-temperature ECD measurements
were carried out by using an Optistat optical spectroscopy cryostat
(Oxford Instruments, Abingdon, UK) fixed to the sample compartment
of the ECD instrument, in the temperature range from +25 to −160
°C, using the same measurement parameters. Baseline correction
was done by subtracting the spectrum of a reference solvent obtained
under the same conditions; the normalization was done using a concentration
at 25 °C. The VCD and IR spectra of 3 and 3D were measured simultaneously using a Chiral IR-2X from
BioTools (Jupiter, FL, USA) at a resolution of 4 cm–1 in the range of 2000–950 cm–1 in CDCl3 as a solvent. A solution with a concentration of ∼0.1
M was measured in a BaF2 cell with a path length of 100
μm over the course of ca. 8 h to improve the signal-to-noise
ratio. Baseline correction was achieved by subtracting the spectrum
of a solvent recorded under the same conditions.
Results and Discussion
Characterization of the
Materials
ATR-IR and Raman Spectroscopy
Three compounds named
rotors 1, 2, and 3 and their
deuterated analogues 1D, 2D, and 3D were chosen for vibrational spectroscopy characterization. Raman
and ATR-IR spectroscopy methods were used, and the experimental results
were verified by theoretical calculations using the B3LYP/6-31G(d)
method. The theoretical calculations were performed for molecules
of rotor 3, for which the crystallographic structure
has been published.[17] The calculated and
experimental Raman and IR spectra of rotor 3 are shown
in Figure . Moreover,
all calculated wavenumbers, activity in Raman and IR spectra, and
proposed assignment are presented in Table S1 in the Supporting Information.
Figure 5
Experimental and theoretical (scaling
factor = 0.961) spectra of
rotor 3: Raman (a,c) and IR (b,d).
Experimental and theoretical (scaling
factor = 0.961) spectra of
rotor 3: Raman (a,c) and IR (b,d).The spectra consist of many bands, so for the analysis and assignment
of modes, and will be divided into subranges. In the ATR-IR spectra
of 2, 2D, 3, and 3D, broadbands observed in the range 3500–3010 cm–1 are assigned to stretching vibrations of O–H bonds (Figure
S1 in Supporting Information). In the range
between 3050 and 2800 cm–1 in both Raman and ATR-IR
spectra, multicomponent bands assigned to symmetric and antisymmetric
stretching vibrations of saturated C–H bonds are recorded for
all compounds. The above observation is confirmed by theoretical calculations.The Raman and ATR-IR spectra of non-deuterated 1, 2, and 3 and deuterated 1D, 2D, and 3D rotors in the region of the rotator
vibrations are presented in Figure . In the range from 2400 to 1400 cm–1, bands of the highest intensity both in Raman and ATR-IR spectra
are observed. Most of these bands are assigned to the different vibrations
of a rotator, and the axle of rotation and this range is of particular
interest. In Table , wavenumbers and the assignment of these bands are provided. A medium
intensity band located above 2200 cm–1 in Raman
spectra of both non-deuterated and deuterated rotors is assigned to
the stretching vibrations of C≡C bonds that form the axle of
rotation. The position and intensity of the band vary for different
rotors. In the Raman spectrum of rotor 1, a singular
band with a peak located at 2223 cm–1 is observed.
In the Raman spectra of a deuterated analogue 1D, the
band consists of two components; the main is located at 2226 cm–1 and a weaker band, in the form of asymmetry of main
band, at 2210 cm–1. The opposite behavior can be
perceived in the spectra gathered for the pairs of rotors 2 and 2D and 3 and 3D. For
all of them, the band under discussion consists of two components
with the less intense one shifted to higher wavenumbers. Comparing
the positions, one can notice a red shift of the main component and
a blue shift of a secondary component in the spectra of deuterated
rotors 2D and 3D, in relation to the spectra
of rotors 2 and 3. The analysis of ATR-IR
spectra indicates a lack of the bands in the spectral region discussed.
Theoretical spectra confirm this observation (see Figure ). The interpretation of the
experimental observations discussed above leads to several essential
remarks. Similar values of wavenumbers of the main band attributed
to C≡C bonds for the pairs of rotors 2 and 3 and also for 2D and 3D indicate
a similar chemical environment of the rotators in pairs of molecules
(non-deuterated and deuterated). This indicates that an additional
ethyl group present in rotors 3 and 3D does
not influence the rotational dynamics of the rotator. The decrease
in the wavenumber of this band for pairs of rotors 2 (2219
cm–1) and 2D (2216 cm–1) and 3 (2220 cm–1) and 3D (2215 cm–1) can be explained with mass effect.
A deuterated rotator in 2D and 3D has a
more substantial mass, and thus, a higher moment of inertia, which
causes a more significant deformation of the rotating ring (it flattens
in the direction of the rotation axis). This leads to a slight elongation
of the C≡C bonds and then, due to the smaller value of bond
force constant, the wavenumber of the band assigned to the stretching
vibration of the C≡C bonds shifts to lower wavenumber values.
However, the wavenumber of the stretching vibration of C≡C
bonds for rotors 1 and 1D is greater than
for the rest of rotors because the steric hindrance for ring rotation
is larger because of the existence of acetate groups in the proximity
of the rotating ring. As a consequence, the frequency of rotator rotation
decreases and causes smaller, compared to rotors 2, 2D, 3, 3D, ring deformation. As
a result, the length of C≡C bonds in rotors 1 and 1D is slightly shorter, the force constant is greater, which
leads to the higher wavenumber of bands corresponding to stretching
vibrations of C≡C bonds being observed. However, there are
no bands present in the experimental ATR-IR spectra of all rotors
(non-deuterated and deuterated) assigned to the stretching vibrations
of C≡C bonds. This is in agreement with the theoretical calculations
that indicate practically negligible intensity of this vibration in
the IR spectrum (see Figure ).
Figure 6
ATR-IR (a,b) and Raman (c,d) spectra of non-deuterated and deuterated
compounds. Bands * and # are assigned to stretching vibrations of
C–D bonds.
Table 1
Positions
(cm–1)
of Bands in the Raman and ATR-IR Spectra of Rotors 1–3 and 1D–3D in the 2300–1400 cm–1 Range and Proposed Assignmenta
ATR-IR (a,b) and Raman (c,d) spectra of non-deuterated and deuterated
compounds. Bands * and # are assigned to stretching vibrations of
C–D bonds.Abbreviations: s—strong,
m—medium, w—weak, R—rotator, S—stator.In the Raman spectra of rotors 1D, 2D, and 3D, bands assigned to
the stretching vibrations
of C–D bonds are revealed in the slope of the band assigned
to the C≡C stretch, on the higher energy side of the band.
Two bands are present for rotor 1D, and a singular band
is observed for rotors 2D and 3D. All the
bands assigned to the stretching vibrations of C–D bonds are
recorded with very low intensity.In the spectral range 1680–1620
cm–1,
in the Raman and ATR-IR spectra of rotors 2, 2D, 3, and 3D, multicomponent bands are recorded
that can be assigned to the in-phase and out-of-phase stretching vibrations
of C=O bonds occurring in rings A of the stators. For rotor 2D and 3D, bands present in the Raman spectra
are of higher intensity compared to the analogous bands present in
the Raman spectra of rotors 2 and 3. For
rotors 1 and 1D, the ester carbonyl group
stretching vibrations are observed as two peaks in the range between
1750 and 1720 cm–1, strong in the ATR-IR spectra
and very weak in the Raman spectra. A substantial difference in the
position of bands attributed to the C=O stretching vibration
between rotors 1 and 1D and 2, 2D, 3, and 3D is related
to the location of the group in the rotor molecule. As it is seen
from Schemes and 2 and Figure for rotors 1 and 1D, the acetate
groups are present at C17 in ring D, while in the case of rotors 2, 2D, 3, and 3D, there
are α,β-unsaturated carbonyl C=O groups (A ring).
It is worth to note that carbonyl bonds are highly polar because of
the large electronegativity between carbon and oxygen. This generates
a significant dipole moment and, as a result, provides an intense
band that corresponds to the stretching vibration in the IR spectrum
(usually very weak in the Raman spectrum). Generally, the band assigned
to stretching vibrations of α,β-unsaturated carbonyl groups
is registered at much lower wavenumbers in vibrational spectra, as
compared to the C=O bond stretch in acetate groups. This is
because the α,β-unsaturated carbonyl group is conjugated
with a carbon–carbon double bond. This causes the C=O
bond to weaken, lowers the force constant, and, hence, shifts the
band position of stretching vibration toward lower wavenumbers. The
analysis of our results indicates a difference of about 80 cm–1. Additionally, this promotes geometrical changes
and, in consequence, increases the activity of the stretching vibration
of C=O bonds in Raman spectra of rotors 2, 2D, 3, and 3D, as compared to 1 and 1D. Moreover, for deuterated compounds 2D and 3D, the increase in the intensity of the
C=O vibration, in Raman spectra with respect to non-deuterated
compounds, 2 and 3, can be caused by changes
in the rotational dynamics of the rotator and the influence on α,β-unsaturated
carbonyl groups in stators. For the asymmetric stretching vibration
of the C=C bond in the aromatic ring of the rotator, a two-component
band near 1600 cm–1 and a two-component band near
1500 cm–1 are present, respectively, in the Raman
and the ATR-IR spectra of rotors 1, 2, and 3. The positions of the bands in the corresponding spectra
of rotors 1D, 2D, and 3D are
shifted toward lower wavenumbers. This is confirmed by theoretical
calculations conducted for rotor 3, according to which
there are two different stretching vibrations of double C=C
bonds present in the rotator, one at 1597 cm–1,
with high intensity in Raman spectroscopy, and a second one at 1493
cm–1 of medium intensity in an IR spectrum.In the experimental spectra of rotors 2, 2D, 3, and 3D, there is also an additional
asymmetric band in the 1620–1610 cm–1 range,
originating from the stretching vibration of C=C bonds present
in the A ring of the stators mentioned above. In the range between
1450 and 1400 cm–1, in both Raman and ATR-IR spectroscopy,
multicomponent bands are recorded. Bands in this region can be assigned
to scissoring vibrations of methyl and methylene groups that are also
present in the stators.The observation of crystallite morphology
of all samples under
an optical microscope allows us to select those for further spectroscopic
characterization. Samples of rotors 1, 3, and 3D are the most interesting for further measurements
because of their well-shaped crystallites of size ranging from a couple
of microns, in the case of rotor 1, to several hundred
microns, in the case of rotor 3D. Rotors 2 and 2D present as very fine powders, with particles
of sizes distinctly below micrometer. Here, we show the results of
the spectroscopic study concerning polarized Raman spectra measurements
and angular analysis for rotors 1, 3, and 3D. For each of the rotors, one crystallite with a well-developed
crystalline surface was chosen for the measurements of polarized Raman
spectra.The polarized Raman spectra of the selected crystallites
of rotors 1, 3, and 3D are
presented in Figure . In all cases, spectra
show significant changes in the intensity of the bands for parallel
(XX) and cross (XY) polarization, which indicates the crystallinity
of the sample. The comparison of the polarized spectra for all other
rotors are depicted in Figure S2 (Supporting Information). As it is seen from Figure a–c, the intensity of modes assigned to the stretching
vibration of the C≡C bond in the axle and C=C bonds
in the ring of the rotator for parallel (XX) and perpendicular (XY)
polarization is very different, that is, from about three to five
times higher in (XX) polarization, whereas the intensity of other
modes assigned to C=O, C=C (S) in stators, O–H
or skeletal, and C–D bonds (the last one only for deuterated
compound) is comparable for both polarizations. The relation between
the intensity of the bands mentioned above reverses after rotating
the samples by an angle of 90° (see Figure S3 in Supporting Information). This is a consequence
of the change in selection rules for crystalline materials. In the
discussed spectral range of Raman spectra, it can be seen that the
intensity of the bands depends on the geometrical relationship between
the polarization of the incident laser light (direction of the electric
field vector) and the orientation of the rotor molecule. For a 0°
angle, the electric field vector of the incident laser light must
be parallel or almost parallel to the axle of the rotator in the rotor
molecule, that is, parallel to C≡C bonds, resulting in the
maximum intensity of the band assigned to C≡C bond stretch.
For an angle of a 90°, the electric field vector is perpendicular
to the axle, and so the vibration observed cannot be excited, resulting
in the disappearance of the latter band. For a rough analysis of the
spectroscopic results of crystalline samples, let us now assume that
the stators are perpendicular to the axle. Then, for an angle of 90°,
the electric field vector of incident light is parallel to the stators.
Thus, the electric field vector is close to parallel to C=O
and O–H bonds for rotors 3 and 3D. The intensity of the bands assigned to the vibrations of these
bonds would be then maximum. We should note that there are no bands
corresponding to such bonds (C=O and O–H) in the spectrum
of rotor 1.
Figure 7
Selected parts of the Raman spectrum associated
with vibrations
of double and triple CC bonds, carbonyl groups, C–D, and O–H
for rotors 1 (a), 3 (b), and 3D (c) are presented. R—rotator, S—stator.
Selected parts of the Raman spectrum associated
with vibrations
of double and triple CC bonds, carbonyl groups, C–D, and O–H
for rotors 1 (a), 3 (b), and 3D (c) are presented. R—rotator, S—stator.In the abovementioned approximation, we roughly assumed the
right-angle
geometry of the rotor molecule and also that the molecule lies in
the plane of observation. Given that the bands in the spectra appear
as not quite polarized, this assumption may not be entirely correct
for a real crystal. The geometry of rotor molecule 3 drawn
on the basis of crystallographic data (Figure ) indicates that the angle between stators
and axle of rotator is slightly different than 90°. Additionally,
the angular dependence of the intensity of stretching vibrations of
C–D bonds is similar to that of C=O and O–H bonds
(3D), which confirms a similar geometrical orientation
of these three bonds in the molecule. To further investigate the polarization
differences, the measurements of samples of rotors 1, 3, and 3D were carried out for different angles
while the crystallite was rotated by a predetermined angle. Figures a and 9a show the dependence of the intensity recorded in parallel
(XX) polarization versus angle of rotation of the samples 1 and 3 for the mode assigned to the stretching vibration
of the C≡C bond in the rotator. The dependence for sample 3D
is shown in Figure S4 in Supporting Information. For all crystallites measured, the initial orientation was not
only different but also impossible to determine in the midst of conducting
measurement. Therefore, the maximum intensity can be observed for
different angles. On that account, the scale of angles, as shown in Figures a, 9a, and S4, was adjusted so that
an angle of 0° would match the maximum of the Raman signal calculated
from the sine approximation of the dependences measured. Experimental
dependences for all samples were fitted using the sine function
Figure 8
Dependencies of intensity
vs angle of rotation of the sample for
the band assigned to stretching vibration of C=C bonds in the
rotator recorded in parallel (XX) polarization for rotor 1. The Raman spectra recorded for corresponding angles are depicted
on the right side.
Figure 9
Dependencies of intensity
vs angle of rotation of the sample for
the band assigned to stretching vibration of C=C bonds in rotator
recorded in parallel (XX) polarization for rotor 3. The
Raman spectra recorded for corresponding angles are depicted on the
right side.
Dependencies of intensity
vs angle of rotation of the sample for
the band assigned to stretching vibration of C=C bonds in the
rotator recorded in parallel (XX) polarization for rotor 1. The Raman spectra recorded for corresponding angles are depicted
on the right side.Dependencies of intensity
vs angle of rotation of the sample for
the band assigned to stretching vibration of C=C bonds in rotator
recorded in parallel (XX) polarization for rotor 3. The
Raman spectra recorded for corresponding angles are depicted on the
right side.The maximum and minimum of the
Raman signal are separated by an
angle of about 90°. The Raman spectra that correspond to three
different angular positions of the samples are depicted in Figures b and 9b. Tracking the dotted lines from the Raman spectra to the
bottom part of the figures, one can see the assignment of corresponding
spectra to the angular position of the crystal investigated (Figures c and 9c).
CD Analysis
CD
spectroscopy has constantly
illustrated its high sensitivity in the study of conformational diversity
of chiral species, as well as their conformational stability.[26,31−37] Therefore, in the course of this work, we decided to add this technique
to our in-depth studies to explore the ECD and VCD properties in order
to gain more insights into the conformational stability in solution
of the investigated steroidal rotors. First, ECD and UV spectra of 1–3 and 1D–3D were recorded in
acetonitrile at room temperature (Figure ). The ECD curves exhibit two types of profiles,
which are significantly different from each other in the position
of Cotton effects (CEs) and their intensity. In all cases, ECD spectra
of steroidal compounds 1–3 and their relevant
deuterated analogues 1D–3D are identical. The
replacement of hydrogen with deuterium is not expected to have any
effect on the ECD spectra, and this effect is also quite minor on
the presented VCD spectra because of the great flexibility of the
axle, as well as the rotator. The experimental data of 1 and 1D display one negative CE at 275 nm and shoulders
at 250, 220, and 210 nm. These bands are mainly attributed to π–π*
transitions of the diethynylphenylene chromophore. In the same region
in the UV spectrum, there are bands at ∼325, 290, 270, 220,
and 213 nm. For rotors 2 and 3 and 2D and 3D, there is a broad long-wavelength negative
CE centered at ∼330 nm related to the n−π* transition
of the enone chromophore in the stator part of molecule, then there
are two intense bands centered at ∼240 nm derived from π–π*
benzene transitions, and a band at ∼215 nm originating from
admixture of the π–π* benzene and enone transitions.
However, because of the slight energy difference between these excitations
their precise determination is impeded. One may also notice that the
CE centered at 270 nm exhibits a well-developed vibrational structure.
Figure 10
ECD
and UV spectra of 1–3 and 1D–3D rotators measured in acetonitrile at room temperature.
ECD
and UV spectra of 1–3 and 1D–3D rotators measured in acetonitrile at room temperature.Next, in the course of our work, the variable low-temperature
ECD
measurements were carried out to check the thermal stability of the
investigated molecular rotors. As a model for this part of the study,
we selected rotor 3. In Figure , the ECD spectra recorded in the mixture
MeOH/EtOH = 1:4 in the temperature range from +20 to −160 °C
are shown. As shown in Figure , lowering the measurement temperature resulted in
a substantial change in the intensity of all ECD/UV bands, with the
two isodichroic points at 260 and 291 nm. The ECD spectra showed a
systematic increase of band intensity with lowering the temperature.
This means that the equilibrium is shifted to the thermodynamically
most stable conformer. The changes in the intensity of the main bands
are because of the flexibility of the bonds throughout the entire
rotator bridge, while the steroid part remains stable. This hypothesis
is supported by the fact that steroidal stators are quite conformationally
rigid and do not generate any significant impact onto the variable-temperature
ECD spectra.
Figure 11
Variable low-temperature ECD and UV measurements of 3 recorded in the mixture of MeOH/EtOH = 1:4.
Variable low-temperature ECD and UV measurements of 3 recorded in the mixture of MeOH/EtOH = 1:4.In order to predict the most favorable conformation(s) in
solution,
we simulated at the TDFFT level of theory ECD spectra for representative
conformers of rotor 3 by changing systematically the
torsion angle C16–C17–C20–C21 (acc. numbering
in Scheme and Figure ), starting directly
from the modification of the X-ray structure previously published
for a similar compound.[16] We used this
strategy because computed conformers (obtained by simulations using
molecular mechanics level follow by DFT optimizations) exhibit plenty
of structures with quite similar energy differences (Figure S5). This approach is based on the straight comparison
of experimental and simulated spectra: a good match supports the predicted
conformational analysis.[38] For all conformers,
ECD spectra were calculated at the CAM-B3LYP/def2-TZVP level of theory
using the PCM model for CH3CN. As a result of our analysis,
conformer 3a with the value of torsion angle +50°
shows the most intense CEs at ca. 230 nm. Thus, this conformation
exhibits the best agreement with the experimental data (Figure ), actually indicating
the most stable structure in solution among the set of investigated
structures. Some inconsistency in the range 300–380 nm are
related to the use of a constant band width for the whole investigated
spectral region (see also Figure S6). Another
way of looking at the question of conformational stability is VCD
spectroscopy. The experimental VCD and IR spectra of 3 and 3D are recorded in chloroform and presented in Figure , together with
DFT simulations performed for previously selected conformation 3a and 3Da at the B3LYP/6-311+G(d,p) level of
theory using the PCM model for CHCl3.
Figure 12
Comparison of the experimental
and simulated spectra of 3 by changing the torsion angle
C16–C17–C20–C21
(band width = 0.43 eV, UV shift = 0 nm).
Figure 13
Comparison
of the experimental and calculated VCD and IR spectra
of 3 and 3D (band width = 10 cm–1, scaling factor = 0.983).
Comparison of the experimental
and simulated spectra of 3 by changing the torsion angle
C16–C17–C20–C21
(band width = 0.43 eV, UV shift = 0 nm).Comparison
of the experimental and calculated VCD and IR spectra
of 3 and 3D (band width = 10 cm–1, scaling factor = 0.983).DFT simulations for 3a and its deuterated analogue 3Da show good agreement with the experimental spectra; all
experimental spectral features are well reproduced. This additionally
confirms the validity of the computed conformational species and conclusions
derived from ECD on the most preferable conformation in solution.
Conclusions
The comprehensive spectroscopy
analysis of molecular rotors 1–3 and their deuterated
analogues 1D–3D was performed. The interpretation
of the experimental data was supported
by quantum chemical calculations. Vibrational spectroscopy provided
information which allows to distinguish structures of rotors, mainly
due to the differences between functional groups in stators and deuterated
rotator. The analysis of the most characteristic bands confirmed different
molecular dynamics of the rotors investigated. However, there is no
spectroscopic evidence as to which single C–C bond is responsible
for the rotation of the rotator. Angle-dependent polarized Raman spectra
confirmed the crystallinity of three samples. ECD and VCD spectra
of compounds 1–3 and their relevant deuterated
analogues are identical because there is no any influence of deuterium
substitution onto the electronic transitions of chromophore units.
Furthermore, this influence is also not visible in vibrational spectra
perhaps because of the great flexibility of the axle, as well as the
rotator. The thermal stability monitored by the low-temperature ECD
measurements shows that the equilibrium is shifted to the thermodynamically
most stable conformer. This finding was fully confirmed by theoretical
simulations of chiroptical data. On the other hand, calculations of
ECD and VCD data and their good reproduction proved that the investigated
rotors exhibit properties which are not governed by supramolecular
interaction. In light of our experimental results supported by theoretical
calculations, we are able to probe the vibrational, optical, and chiroptical
properties of steroidal compounds and confirm that they can work as
molecular rotors.
Authors: Yi Liu; Amar H Flood; Paul A Bonvallet; Scott A Vignon; Brian H Northrop; Hsian-Rong Tseng; Jan O Jeppesen; Tony J Huang; Branden Brough; Marko Baller; Sergei Magonov; Santiago D Solares; William A Goddard; Chih-Ming Ho; J Fraser Stoddart Journal: J Am Chem Soc Date: 2005-07-13 Impact factor: 15.419