Literature DB >> 33063432

Space, time and microdiversity: towards a resolution revolution in microbiomics.

Lucas Paoli1, Shinichi Sunagawa1.   

Abstract

Entities:  

Year:  2020        PMID： 33063432      PMCID： PMC7894491          DOI： 10.1111/1758-2229.12897

Source DB:  PubMed          Journal:  Environ Microbiol Rep        ISSN： 1758-2229            Impact factor:   3.541


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  27 in total

1.  Functional overlap of the Arabidopsis leaf and root microbiota.

Authors:  Yang Bai; Daniel B Müller; Girish Srinivas; Ruben Garrido-Oter; Eva Potthoff; Matthias Rott; Nina Dombrowski; Philipp C Münch; Stijn Spaepen; Mitja Remus-Emsermann; Bruno Hüttel; Alice C McHardy; Julia A Vorholt; Paul Schulze-Lefert
Journal:  Nature       Date:  2015-12-02       Impact factor: 49.962

2.  metaFlye: scalable long-read metagenome assembly using repeat graphs.

Authors:  Mikhail Kolmogorov; Derek M Bickhart; Bahar Behsaz; Alexey Gurevich; Mikhail Rayko; Sung Bong Shin; Kristen Kuhn; Jeffrey Yuan; Evgeny Polevikov; Timothy P L Smith; Pavel A Pevzner
Journal:  Nat Methods       Date:  2020-10-05       Impact factor: 28.547

3.  When microbiologists plunge into the ocean.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2020-02       Impact factor: 28.547

4.  Host lifestyle affects human microbiota on daily timescales.

Authors:  Lawrence A David; Arne C Materna; Jonathan Friedman; Maria I Campos-Baptista; Matthew C Blackburn; Allison Perrotta; Susan E Erdman; Eric J Alm
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

5.  Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data.

Authors:  Birge D Özel Duygan; Noushin Hadadi; Ambrin Farizah Babu; Markus Seyfried; Jan R van der Meer
Journal:  Commun Biol       Date:  2020-07-15

6.  PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph.

Authors:  Guillaume Gautreau; Adelme Bazin; Mathieu Gachet; Rémi Planel; Laura Burlot; Mathieu Dubois; Amandine Perrin; Claudine Médigue; Alexandra Calteau; Stéphane Cruveiller; Catherine Matias; Christophe Ambroise; Eduardo P C Rocha; David Vallenet
Journal:  PLoS Comput Biol       Date:  2020-03-19       Impact factor: 4.475

7.  Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.

Authors:  Jakob Wirbel; Paul Theodor Pyl; Ece Kartal; Konrad Zych; Alireza Kashani; Alessio Milanese; Jonas S Fleck; Anita Y Voigt; Albert Palleja; Ruby Ponnudurai; Shinichi Sunagawa; Luis Pedro Coelho; Petra Schrotz-King; Emily Vogtmann; Nina Habermann; Emma Niméus; Andrew M Thomas; Paolo Manghi; Sara Gandini; Davide Serrano; Sayaka Mizutani; Hirotsugu Shiroma; Satoshi Shiba; Tatsuhiro Shibata; Shinichi Yachida; Takuji Yamada; Levi Waldron; Alessio Naccarati; Nicola Segata; Rashmi Sinha; Cornelia M Ulrich; Hermann Brenner; Manimozhiyan Arumugam; Peer Bork; Georg Zeller
Journal:  Nat Med       Date:  2019-04-01       Impact factor: 53.440

Review 8.  Strain-level epidemiology of microbial communities and the human microbiome.

Authors:  Yan Yan; Long H Nguyen; Eric A Franzosa; Curtis Huttenhower
Journal:  Genome Med       Date:  2020-08-13       Impact factor: 11.117

9.  Complete, closed bacterial genomes from microbiomes using nanopore sequencing.

Authors:  Eli L Moss; Dylan G Maghini; Ami S Bhatt
Journal:  Nat Biotechnol       Date:  2020-02-10       Impact factor: 54.908
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