| Literature DB >> 33060837 |
Yongwon Cho1, Young-Gon Kim1, Sang Min Lee2, Joon Beom Seo3, Namkug Kim4.
Abstract
We evaluated the reproducibility of computer-aided detections (CADs) with a convolutEntities:
Mesh:
Year: 2020 PMID: 33060837 PMCID: PMC7567088 DOI: 10.1038/s41598-020-74626-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The workflow of the reproducibility of CAD based on deep learning. (a) Training with initial CXRs using eDensYOLO, (b) evaluation of (a), and (c) reproducibility of CAD with follow-up CXRs (PPA and CPPA).
Figure 2Dataset-trees used in our study from AMC. AMC Asan Medical Center.
The number of chest radiograph (CXR) datasets for each disease pattern in the training and test sets extracted from our institution.
| Classes | Number of images in training set (with tuning set) | Number of images in test set |
|---|---|---|
| N | 756 | 188 |
| C | 426 | 124 |
| IO | 232 | 48 |
| PLE | 1113 | 248 |
| PN | 520 | 69 |
| Total | 3095 | 677 |
Nodule (N), consolidation (C), interstitial opacity (IO), pleural effusion (PLE), and pneumothorax (PN).
The number of paired chest radiograph (CXR) datasets for the initial and follow-up CXR images including the five disease patterns.
| Classes | Pair datasets for evaluating reproducibility |
|---|---|
| N | 121 |
| C | 28 |
| IO | 12 |
| PLE | 67 |
| PN | 20 |
| Total | 248 |
Nodule (N), consolidation (C), interstitial opacity (IO), pleural effusion (PLE), and pneumothorax (PN).
Figure 3Representative examples of initial chest radiographs (CXRs) taken from each patient within a short-term interval (up rows), follow-up images of CXRs taken from each patient within a short-term interval (middle rows), and gold-standards labeled by two thoracic radiologists (bottom rows). N nodule, C consolidation, IO interstitial opacity, PLE pleural effusion, PN pneumothorax in Fig. 2.
Figure 4Architecture of the eDenseYOLO of which backend network is DenseNet201. The output layers of eDenseYOLO, which is You Only Look Once v2 with DenseNet201, were modified for improved robustness to the variable size of disease patterns. If the input resolution was 256 × 256, the feature map for the last layer was 8 × 8, 16 × 16, and 32 × 32 with skip connection.
Figure 5(a) An example of confusion matrix for reproducibility of CAD between initial and follow-up CXRs at cut-off threshold (0.6). Reproducibility result matrices of eDenseYOLO for initial and follow-up CXRs by (b) N, (c) C, (d) IO, (e) PLE, and (f) PN. Note: O: correct prediction, X: wrong prediction.
Figure 6Free-response receiver operating characteristic of the computer-aided detection on five disease patterns with eDenseYOLO.
Figure of merit (FOM) (95% confidence interval) of jackknife free-response receiver operating curve (JAFROC) and reproducibility analysis of PPA and CPPA of CAD-based detection algorithms for five classes.
| Classes | FOM (95% CI) | PPA (%) | CPPA (%) |
|---|---|---|---|
| N | 0.72 [0.68–0.75] | 83.39 ± 4.12 | 71.70 ± 6.29 |
| C | 0.41 [0.33–0.43] | 74.14 ± 5.13 | 59.13 ± 6.88 |
| IO | 0.97 [0.96–0.98] | 95.12 ± 5.78 | 91.16 ± 8.84 |
| PLE | 0.94 [0.92–0.95] | 96.84 ± 1.62 | 93.91 ± 3.11 |
| PN | 0.87 [0.76–0.93] | 84.58 ± 9.99 | 74.17 ± 14.55 |
FOM Figure of Merit.
Figure 7Examples of reproducibility between initial CXRs and follow-up CXRs; the inference of initial CXRs (left column), gold-standards labeled by two thoracic radiologists (the two columns in middle), and the inference of follow-up CXRs (right column). (a) positive agreement of N, (b) positive agreement of C, and (c) positive agreement of PLE on the initial and follow-up CXRs. Colors represent the disease types (N, red; C, green; IO, yellow; PLE, blue; PN, pink; and gold-standard, white).
Figure 8Examples of reproducibility between initial CXRs and follow-up CXRs; the inference of initial CXRs (left column), gold-standards labeled by two thoracic radiologists (the one column in middle), and the inference of follow-up CXRs (right column). (a) Negative agreement of N, (b) negative agreement of C, and (c) negative agreement of PLE, and (d) negative agreement of PN on the initial and follow-up CXRs. The colored boxes of each image represent false positives (N, red; C, green; IO, yellow; PLE, blue; PN pink; and gold-standard, white).
Figure 9The plots with Spearman's rank correlation. (a) The recall of CAD in the test set and PPA, and (b) the recall of CAD in test set and CPPA.