Literature DB >> 33051672

PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments.

Richard H Adams1, Todd A Castoe2, Michael DeGiorgio1.   

Abstract

SUMMARY: Here, we present PhyloWGA, an open source R package for conducting phylogenetic analysis and investigation of whole genome data. AVAILABILITYAND IMPLEMENTATION: Available at Github (https://github.com/radamsRHA/PhyloWGA). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Mesh：

Year:  2021        PMID： 33051672      PMCID： PMC8317108          DOI： 10.1093/bioinformatics/btaa884

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  23 in total

1.  The gene tree delusion.

Authors:  Mark S Springer; John Gatesy
Journal:  Mol Phylogenet Evol       Date:  2015-07-31       Impact factor: 4.286

2.  Inconsistency of phylogenetic estimates from concatenated data under coalescence.

Authors:  Laura Salter Kubatko; James H Degnan
Journal:  Syst Biol       Date:  2007-02       Impact factor: 15.683

3.  Testing congruence in phylogenomic analysis.

Authors:  Jessica W Leigh; Edward Susko; Manuela Baumgartner; Andrew J Roger
Journal:  Syst Biol       Date:  2008-02       Impact factor: 15.683

Review 4.  Gene tree discordance, phylogenetic inference and the multispecies coalescent.

Authors:  James H Degnan; Noah A Rosenberg
Journal:  Trends Ecol Evol       Date:  2009-03-21       Impact factor: 17.712

5.  Is a new and general theory of molecular systematics emerging?

Authors:  Scott V Edwards
Journal:  Evolution       Date:  2009-01       Impact factor: 3.694

6.  Statistical binning enables an accurate coalescent-based estimation of the avian tree.

Authors:  Siavash Mirarab; Md Shamsuzzoha Bayzid; Bastien Boussau; Tandy Warnow
Journal:  Science       Date:  2014-12-11       Impact factor: 47.728

7.  Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses.

Authors:  Md Shamsuzzoha Bayzid; Siavash Mirarab; Bastien Boussau; Tandy Warnow
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

8.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

9.  Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow.

Authors:  Verena E Kutschera; Tobias Bidon; Frank Hailer; Julia L Rodi; Steven R Fain; Axel Janke
Journal:  Mol Biol Evol       Date:  2014-06-05       Impact factor: 16.240

10.  In silico phylogenomics using complete genomes: a case study on the evolution of hominoids.

Authors:  Igor Rodrigues Costa; Francisco Prosdocimi; W Bryan Jennings
Journal:  Genome Res       Date:  2016-07-19       Impact factor: 9.043
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.