Literature DB >> 33047445

Culturing novel and abundant pelagiphages in the ocean.

Zefeng Zhang1, Fang Qin1, Feng Chen2, Xiao Chu3, Haiwei Luo3, Rui Zhang4, Sen Du1, Zhen Tian1, Yanlin Zhao1.   

Abstract

Viruses play a key role in biogeochemical cycling and host mortality, metabolism, physiology and evolution in the ocean. Viruses that infect the globally abundant SAR11 bacteria (pelagiphages) were reported to be an important component of the marine viral communities. Our current knowledge of pelagiphages is based on a few studies and therefore is limited. In this study, 10 new pelagiphages were isolated and genomically characterized. These pelagiphages represent the first cultivated representatives of four viral lineages only found in metagenomic sequencing datasets previously. Many abundant environmental viral sequences, i.e., single-virus vSAG 37-F6 and several Global Ocean Viromes (GOV) viral populations, are now further confirmed with these pelagiphages. Viromic read mapping reveals that these new pelagiphages are globally distributed in the ocean and can be detected throughout the water column. Remarkably, isolation of these pelagiphages contributed up to 12% of all viromic reads annotated in the analysed viromes. Altogether, this study has greatly broadened our understanding of pelagiphages regarding their morphology, genetic diversity, infection strategies, and distribution pattern. The availability of these newly isolated pelagiphages and their genome sequences will allow us to further explore their infectivities and ecological strategies.
© 2020 Society for Applied Microbiology and John Wiley & Sons Ltd.

Entities:  

Year:  2020        PMID: 33047445     DOI: 10.1111/1462-2920.15272

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  9 in total

1.  An Inducible Microbacterium Prophage vB_MoxS-R1 Represents a Novel Lineage of Siphovirus.

Authors:  Hongrui Zheng; Binbin Liu; Yongle Xu; Zefeng Zhang; Hongcong Man; Jihua Liu; Feng Chen
Journal:  Viruses       Date:  2022-03-31       Impact factor: 5.818

2.  Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity.

Authors:  Yu-Yi Zhang; Yicong Chen; Xiaoman Wei; Jie Cui
Journal:  Sci China Life Sci       Date:  2021-06-17       Impact factor: 6.038

3.  A Novel and Ubiquitous Marine Methylophage Provides Insights into Viral-Host Coevolution and Possible Host-Range Expansion in Streamlined Marine Heterotrophic Bacteria.

Authors:  Holger H Buchholz; Luis M Bolaños; Ashley G Bell; Michelle L Michelsen; Michael J Allen; Ben Temperton
Journal:  Appl Environ Microbiol       Date:  2022-03-21       Impact factor: 4.792

4.  Newly identified HMO-2011-type phages reveal genomic diversity and biogeographic distributions of this marine viral group.

Authors:  Fang Qin; Sen Du; Zefeng Zhang; Hanqi Ying; Ying Wu; Guiyuan Zhao; Mingyu Yang; Yanlin Zhao
Journal:  ISME J       Date:  2022-01-12       Impact factor: 11.217

5.  Genomic Characterization and Distribution Pattern of a Novel Marine OM43 Phage.

Authors:  Mingyu Yang; Qian Xia; Sen Du; Zefeng Zhang; Fang Qin; Yanlin Zhao
Journal:  Front Microbiol       Date:  2021-03-24       Impact factor: 5.640

6.  Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption.

Authors:  Chengxiang Gu; Yantao Liang; Jiansen Li; Hongbing Shao; Yong Jiang; Xinhao Zhou; Chen Gao; Xianrong Li; Wenjing Zhang; Cui Guo; Hui He; Hualong Wang; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Curtis A Suttle; Andrew McMinn; Jiwei Tian; Min Wang
Journal:  iScience       Date:  2021-11-14

7.  Genome and Ecology of a Novel Alteromonas Podovirus, ZP6, Representing a New Viral Genus, Mareflavirus.

Authors:  Ziyue Wang; Fang Zhang; Yantao Liang; Kaiyang Zheng; Chengxiang Gu; Wenjing Zhang; Yundan Liu; Xinran Zhang; Hongbing Shao; Yong Jiang; Cui Guo; Hui He; Hualong Wang; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Jianfeng He; Andrew McMinn; Min Wang
Journal:  Microbiol Spectr       Date:  2021-10-13

8.  Characterization and Genomic Analysis of the First Podophage Infecting Shewanella, Representing a Novel Viral Cluster.

Authors:  Yue Dong; Kaiyang Zheng; Xiao Zou; Yantao Liang; Yundan Liu; Xiang Li; Hongbing Shao; Yeong Yik Sung; Wen Jye Mok; Li Lian Wong; Andrew McMinn; Min Wang
Journal:  Front Microbiol       Date:  2022-04-01       Impact factor: 6.064

9.  Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages.

Authors:  Sen Du; Fang Qin; Zefeng Zhang; Zhen Tian; Mingyu Yang; Xinxin Liu; Guiyuan Zhao; Qian Xia; Yanlin Zhao
Journal:  Microb Genom       Date:  2021-07
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.