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Literature DB >> 33046895

vLUME: 3D virtual reality for single-molecule localization microscopy.

Alexander Spark¹, Alexandre Kitching¹, Daniel Esteban-Ferrer², Anoushka Handa², Alexander R Carr², Lisa-Maria Needham², Aleks Ponjavic^3,4, Ana Mafalda Santos⁵, James McColl², Christophe Leterrier⁶, Simon J Davis⁵, Ricardo Henriques^7,8, Steven F Lee⁹.

Abstract

vLUME is a virtual reality software package designed to render large three-dimensional single-molecule localization microscopy datasets. vLUME features include visualization, segmentation, bespoke analysis of complex local geometries and exporting features. vLUME can perform complex analysis on real three-dimensional biological samples that would otherwise be impossible by using regular flat-screen visualization programs.

Entities: Chemical

Mesh：

Substances：
Clathrin

Year: 2020 PMID： 33046895 PMCID： PMC7612967 DOI： 10.1038/s41592-020-0962-1

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 47.990

14 in total

1. QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ.

Authors: Ricardo Henriques; Mickael Lelek; Eugenio F Fornasiero; Flavia Valtorta; Christophe Zimmer; Musa M Mhlanga
Journal: Nat Methods Date: 2010-05 Impact factor: 28.547

2. ViSP: representing single-particle localizations in three dimensions.

Authors: Mohamed El Beheiry; Maxime Dahan
Journal: Nat Methods Date: 2013-08 Impact factor: 28.547

Review 3. Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

Authors: Lexy von Diezmann; Yoav Shechtman; W E Moerner
Journal: Chem Rev Date: 2017-02-02 Impact factor: 60.622

4. Super-resolution imaging of the nucleoid-associated protein HU in Caulobacter crescentus.

Authors: Steven F Lee; Michael A Thompson; Monica A Schwartz; Lucy Shapiro; W E Moerner
Journal: Biophys J Date: 2011-04-06 Impact factor: 4.033

5. ConfocalVR: Immersive Visualization for Confocal Microscopy.

Authors: Caroline Stefani; Adam Lacy-Hulbert; Thomas Skillman
Journal: J Mol Biol Date: 2018-06-24 Impact factor: 5.469

Review 6. The nano-architecture of the axonal cytoskeleton.

Authors: Christophe Leterrier; Pankaj Dubey; Subhojit Roy
Journal: Nat Rev Neurosci Date: 2017-11-03 Impact factor: 34.870

7. 3D Bayesian cluster analysis of super-resolution data reveals LAT recruitment to the T cell synapse.

Authors: Juliette Griffié; Leigh Shlomovich; David J Williamson; Michael Shannon; Jesse Aaron; Satya Khuon; Garth L Burn; Lies Boelen; Ruby Peters; Andrew P Cope; Edward A K Cohen; Patrick Rubin-Delanchy; Dylan M Owen
Journal: Sci Rep Date: 2017-06-22 Impact factor: 4.379

8. Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

Authors: Daniel Sage; Thanh-An Pham; Seamus Holden; Hazen Babcock; Tomas Lukes; Thomas Pengo; Jerry Chao; Ramraj Velmurugan; Alex Herbert; Anurag Agrawal; Silvia Colabrese; Ann Wheeler; Anna Archetti; Bernd Rieger; Raimund Ober; Guy M Hagen; Jean-Baptiste Sibarita; Jonas Ries; Ricardo Henriques; Michael Unser
Journal: Nat Methods Date: 2019-04-08 Impact factor: 28.547

vLUME: 3D virtual reality for single-molecule localization microscopy.

1. QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ.

2. ViSP: representing single-particle localizations in three dimensions.

Review 3. Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking.

4. Super-resolution imaging of the nucleoid-associated protein HU in Caulobacter crescentus.

5. ConfocalVR: Immersive Visualization for Confocal Microscopy.

Review 6. The nano-architecture of the axonal cytoskeleton.

7. 3D Bayesian cluster analysis of super-resolution data reveals LAT recruitment to the T cell synapse.

8. Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

9. ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging.

10. Small-molecule labeling of live cell surfaces for three-dimensional super-resolution microscopy.

Review 1. Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research.

2. A Brave New World: Virtual Reality and Augmented Reality in Systems Biology.

3. singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality.

Review 4. Virtual and augmented reality for biomedical applications.