Literature DB >> 33044589

A cellular handbook for collided ribosomes: surveillance pathways and collision types.

Sezen Meydan1,2, Nicholas R Guydosh3.   

Abstract

Translating ribosomes slow down or completely stall when they encounter obstacles on mRNAs. Such events can lead to ribosomes colliding with each other and forming complexes of two (disome), three (trisome) or more ribosomes. While these events can activate surveillance pathways, it has been unclear if collisions are common on endogenous mRNAs and whether they are usually detected by these cellular pathways. Recent genome-wide surveys of collisions revealed widespread distribution of disomes and trisomes across endogenous mRNAs in eukaryotic cells. Several studies further hinted that the recognition of collisions and response to them by multiple surveillance pathways depend on the context and duration of the ribosome stalling. This review considers recent efforts in the identification of endogenous ribosome collisions and cellular pathways dedicated to sense their severity. We further discuss the potential role of collided ribosomes in modulating co-translational events and contributing to cellular homeostasis.

Entities:  

Keywords:  Disome; Programmed ribosome stalling; Ribosome collisions; Ribosome profiling; Surveillance pathway; Trisome

Mesh:

Substances:

Year:  2020        PMID: 33044589      PMCID: PMC7887001          DOI: 10.1007/s00294-020-01111-w

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  74 in total

1.  Phosphorylation of initiation factor 2 alpha by protein kinase GCN2 mediates gene-specific translational control of GCN4 in yeast.

Authors:  T E Dever; L Feng; R C Wek; A M Cigan; T F Donahue; A G Hinnebusch
Journal:  Cell       Date:  1992-02-07       Impact factor: 41.582

Review 2.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 3.  FMRP ribonucleoprotein complexes and RNA homeostasis.

Authors:  Gabriela Aparecida Marcondes Suardi; Luciana Amaral Haddad
Journal:  Adv Genet       Date:  2020-02-06       Impact factor: 1.944

4.  A new paradigm for translational control: inhibition via 5'-3' mRNA tethering by Bicoid and the eIF4E cognate 4EHP.

Authors:  Park F Cho; Francis Poulin; Yoon Andrew Cho-Park; Ian B Cho-Park; Jarred D Chicoine; Paul Lasko; Nahum Sonenberg
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

5.  Role of a ribosome-associated E3 ubiquitin ligase in protein quality control.

Authors:  Mario H Bengtson; Claudio A P Joazeiro
Journal:  Nature       Date:  2010-09-12       Impact factor: 49.962

6.  Disome and Trisome Profiling Reveal Genome-wide Targets of Ribosome Quality Control.

Authors:  Sezen Meydan; Nicholas R Guydosh
Journal:  Mol Cell       Date:  2020-07-01       Impact factor: 17.970

7.  Dom34 rescues ribosomes in 3' untranslated regions.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

8.  Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation.

Authors:  Ryuta Ishimura; Gabor Nagy; Ivan Dotu; Jeffrey H Chuang; Susan L Ackerman
Journal:  Elife       Date:  2016-04-16       Impact factor: 8.140

9.  Ribosome Collisions Result in +1 Frameshifting in the Absence of No-Go Decay.

Authors:  Carrie L Simms; Liewei L Yan; Jessica K Qiu; Hani S Zaher
Journal:  Cell Rep       Date:  2019-08-13       Impact factor: 9.423

10.  EDF1 coordinates cellular responses to ribosome collisions.

Authors:  Niladri K Sinha; Alban Ordureau; Katharina Best; James A Saba; Boris Zinshteyn; Elayanambi Sundaramoorthy; Amit Fulzele; Danielle M Garshott; Timo Denk; Matthias Thoms; Joao A Paulo; J Wade Harper; Eric J Bennett; Roland Beckmann; Rachel Green
Journal:  Elife       Date:  2020-08-03       Impact factor: 8.140

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  12 in total

1.  The landscape of translational stall sites in bacteria revealed by monosome and disome profiling.

Authors:  Tomoya Fujita; Takeshi Yokoyama; Mikako Shirouzu; Hideki Taguchi; Takuhiro Ito; Shintaro Iwasaki
Journal:  RNA       Date:  2021-12-14       Impact factor: 4.942

2.  iRQC, a surveillance pathway for 40S ribosomal quality control during mRNA translation initiation.

Authors:  Danielle M Garshott; Heeseon An; Elayanambi Sundaramoorthy; Marilyn Leonard; Alison Vicary; J Wade Harper; Eric J Bennett
Journal:  Cell Rep       Date:  2021-08-31       Impact factor: 9.423

Review 3.  Ribosome-associated quality-control mechanisms from bacteria to humans.

Authors:  Sebastian Filbeck; Federico Cerullo; Stefan Pfeffer; Claudio A P Joazeiro
Journal:  Mol Cell       Date:  2022-04-21       Impact factor: 19.328

4.  Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.

Authors:  Federico Cerullo; Sebastian Filbeck; Pratik Rajendra Patil; Hao-Chih Hung; Haifei Xu; Julia Vornberger; Florian W Hofer; Jaro Schmitt; Guenter Kramer; Bernd Bukau; Kay Hofmann; Stefan Pfeffer; Claudio A P Joazeiro
Journal:  Nature       Date:  2022-03-09       Impact factor: 69.504

5.  Rebirth of the translational machinery: The importance of recycling ribosomes.

Authors:  David J Young; Nicholas R Guydosh
Journal:  Bioessays       Date:  2022-02-11       Impact factor: 4.653

Review 6.  Chemical modifications to mRNA nucleobases impact translation elongation and termination.

Authors:  Monika K Franco; Kristin S Koutmou
Journal:  Biophys Chem       Date:  2022-02-16       Impact factor: 3.628

7.  Ribosome quality control activity potentiates vaccinia virus protein synthesis during infection.

Authors:  Elayanambi Sundaramoorthy; Andrew P Ryan; Amit Fulzele; Marilyn Leonard; Matthew D Daugherty; Eric J Bennett
Journal:  J Cell Sci       Date:  2021-04-28       Impact factor: 5.285

8.  ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.

Authors:  Jumin Park; Jongbo Lee; Ji-Hyung Kim; Jongbin Lee; Heeju Park; Chunghun Lim
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 9.  The trinity of ribosome-associated quality control and stress signaling for proteostasis and neuronal physiology.

Authors:  Jumin Park; Jongmin Park; Jongbin Lee; Chunghun Lim
Journal:  BMB Rep       Date:  2021-09       Impact factor: 4.778

Review 10.  Minding the message: tactics controlling RNA decay, modification, and translation in virus-infected cells.

Authors:  Hannah M Burgess; Elizabeth I Vink; Ian Mohr
Journal:  Genes Dev       Date:  2022-02-01       Impact factor: 12.890

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