Literature DB >> 33041614

A Matrix-free Likelihood Method for Exploratory Factor Analysis of High-dimensional Gaussian Data.

Fan Dai1, Somak Dutta1, Ranjan Maitra1.   

Abstract

This paper proposes a novel profile likelihood method for estimating the covariance parameters in exploratory factor analysis of high-dimensional Gaussian datasets with fewer observations than number of variables. An implicitly restarted Lanczos algorithm and a limited-memory quasi-Newton method are implemented to develop a matrix-free framework for likelihood maximization. Simulation results show that our method is substantially faster than the expectation-maximization solution without sacrificing accuracy. Our method is applied to fit factor models on data from suicide attempters, suicide ideators and a control group.

Entities:  

Keywords:  EM algorithm; L-BFGS-B; Lanczos algorithm; Profile likelihood; fMRI

Year:  2020        PMID: 33041614      PMCID: PMC7540940          DOI: 10.1080/10618600.2019.1704296

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  6 in total

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Authors:  Jeffrey T Leek
Journal:  Nucleic Acids Res       Date:  2014-10-07       Impact factor: 16.971

2.  Machine learning of neural representations of suicide and emotion concepts identifies suicidal youth.

Authors:  Marcel Adam Just; Lisa Pan; Vladimir L Cherkassky; Dana L McMakin; Christine Cha; Matthew K Nock; David Brent
Journal:  Nat Hum Behav       Date:  2017-10-30

3.  Factor analysis for gene regulatory networks and transcription factor activity profiles.

Authors:  Iosifina Pournara; Lorenz Wernisch
Journal:  BMC Bioinformatics       Date:  2007-02-23       Impact factor: 3.169

Review 4.  Dorsal and ventral attention systems: distinct neural circuits but collaborative roles.

Authors:  Simone Vossel; Joy J Geng; Gereon R Fink
Journal:  Neuroscientist       Date:  2013-07-08       Impact factor: 7.519

5.  Capturing heterogeneity in gene expression studies by surrogate variable analysis.

Authors:  Jeffrey T Leek; John D Storey
Journal:  PLoS Genet       Date:  2007-08-01       Impact factor: 5.917

6.  f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.

Authors:  Florian Buettner; Naruemon Pratanwanich; Davis J McCarthy; John C Marioni; Oliver Stegle
Journal:  Genome Biol       Date:  2017-11-07       Impact factor: 13.583

  6 in total

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