Literature DB >> 33038385

The use of automated data extraction tools to develop a solid organ transplant registry: Proof of concept study of bloodstream infections.

Ricardo M La Hoz1, Terrence Liu2, Donglu Xie3, Beverley Adams-Huet4, DuWayne L Willett5, Robert W Haley6, David E Greenberg7.   

Abstract

BACKGROUND: We created an electronic health record-based registry using automated data extraction tools to study the epidemiology of bloodstream infections (BSI) in solid organ transplant recipients. The overarching goal was to determine the usefulness of an electronic health record-based registry using data extraction tools for clinical research in solid organ transplantation.
METHODS: We performed a retrospective single-center cohort study of adult solid organ transplant recipients from 2010 to 2015. Extraction tools were used to retrieve data from the electronic health record, which was integrated with national data sources. Electronic health records of subjects with positive blood cultures were manually adjudicated using consensus definitions. One-year cumulative incidence, risk factors for BSI acquisition, and 1-year mortality were analyzed by Kaplan-Meier method and Cox modeling, and 30-day mortality with logistic regression.
RESULTS: In 917 solid organ transplant recipients the cumulative incidence of BSI was 8.4% (95% confidence interval 6.8-10.4) with central line-associated BSI as the most common source. The proportion of multidrug-resistant isolates increased from 0% in 2010 to 47% in 2015 (p = 0.03). BSI was the strongest risk factor for 1-year mortality (HR=8.44; 4.99-14.27; p<0.001). In 11 of 14 deaths, BSI was the main cause or contributory in patients with non-rapidly fatal underlying conditions.
CONCLUSIONS: Our study illustrates the usefulness of an electronic health record-based registry using automated extraction tools for clinical research in the field of solid organ transplantation. A BSI reduces the 1-year survival of solid organ transplant recipients. The most common sources of BSIs in our studies are preventable.
Copyright © 2020 The British Infection Association. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bloodstream infections; Electronic databases; Epidemiology; Informatics; Solid organ transplant recipients

Mesh:

Year:  2020        PMID: 33038385      PMCID: PMC8654599          DOI: 10.1016/j.jinf.2020.10.003

Source DB:  PubMed          Journal:  J Infect        ISSN: 0163-4453            Impact factor:   6.072


  25 in total

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3.  Clinical practice guidelines for antimicrobial prophylaxis in surgery.

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Journal:  Am J Health Syst Pharm       Date:  2013-02-01       Impact factor: 2.637

Review 4.  Multidrug-resistant bacteria in solid organ transplant recipients.

Authors:  C Cervera; C van Delden; J Gavaldà; T Welte; M Akova; J Carratalà
Journal:  Clin Microbiol Infect       Date:  2014-09       Impact factor: 8.067

Review 5.  Big data in organ transplantation: registries and administrative claims.

Authors:  A B Massie; L M Kucirka; L M Kuricka; D L Segev
Journal:  Am J Transplant       Date:  2014-08       Impact factor: 8.086

6.  Achieving a nationwide learning health system.

Authors:  Charles P Friedman; Adam K Wong; David Blumenthal
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7.  Current State of Antimicrobial Stewardship at Solid Organ and Hematopoietic Cell Transplant Centers in the United States.

Authors:  Susan K Seo; Kaming Lo; Lilian M Abbo
Journal:  Infect Control Hosp Epidemiol       Date:  2016-07-26       Impact factor: 3.254

8.  An international prospective study of pneumococcal bacteremia: correlation with in vitro resistance, antibiotics administered, and clinical outcome.

Authors:  Victor L Yu; Christine C C Chiou; Charles Feldman; Ake Ortqvist; Jordi Rello; Arthur J Morris; Larry M Baddour; Carlos M Luna; David R Snydman; Margaret Ip; Wen Chien Ko; M Bernadete F Chedid; Antoine Andremont; Keith P Klugman
Journal:  Clin Infect Dis       Date:  2003-07-07       Impact factor: 9.079

9.  Bloodstream infections among heart transplant recipients.

Authors:  Claudia Rodríguez; Patricia Muñoz; Marta Rodríguez-Créixems; Juan F Yañez; Jesús Palomo; Emilio Bouza
Journal:  Transplantation       Date:  2006-02-15       Impact factor: 4.939

10.  Bacteremia in transplant recipients: a prospective study of demographics, etiologic agents, risk factors, and outcomes.

Authors:  M M Wagener; V L Yu
Journal:  Am J Infect Control       Date:  1992-10       Impact factor: 2.918

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  2 in total

1.  Tedizolid vs Linezolid for the Treatment of Nontuberculous Mycobacteria Infections in Solid Organ Transplant Recipients.

Authors:  Yi Kee Poon; Ricardo M La Hoz; Linda S Hynan; James Sanders; Marguerite L Monogue
Journal:  Open Forum Infect Dis       Date:  2021-03-06       Impact factor: 3.835

2.  Epidemiology and risk factors for varicella zoster virus reactivation in heart transplant recipients.

Authors:  Ricardo M La Hoz; Ashley Wallace; Nicolas Barros; Donglu Xie; Linda S Hynan; Terrence Liu; Christina Yek; Scott Schexnayder; Justin L Grodin; Sonia Garg; Mark H Drazner; Matthias Peltz; Robert W Haley; David E Greenberg
Journal:  Transpl Infect Dis       Date:  2020-12-09
  2 in total

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