Literature DB >> 33037070

Heterogeneity in testing, diagnosis and outcome in SARS-CoV-2 infection across outbreak settings in the Greater Toronto Area, Canada: an observational study.

Linwei Wang1, Huiting Ma1, Kristy C Y Yiu1, Andrew Calzavara1, David Landsman1, Linh Luong1, Adrienne K Chan1, Rafal Kustra1, Jeffrey C Kwong1, Marie-Claude Boily1, Stephen Hwang1, Sharon Straus1, Stefan D Baral1, Sharmistha Mishra2.   

Abstract

BACKGROUND: Congregate settings have been disproportionately affected by coronavirus disease 2019 (COVID-19). Our objective was to compare testing for, diagnosis of and death after severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection across 3 settings (residents of long-term care homes, people living in shelters and the rest of the population).
METHODS: We conducted a population-based prospective cohort study involving individuals tested for SARS-CoV-2 in the Greater Toronto Area between Jan. 23, 2020, and May 20, 2020. We sourced person-level data from COVID-19 surveillance and reporting systems in Ontario. We calculated cumulatively diagnosed cases per capita, proportion tested, proportion tested positive and case-fatality proportion for each setting. We estimated the age- and sex-adjusted rate ratios associated with setting for test positivity and case fatality using quasi-Poisson regression.
RESULTS: Over the study period, a total of 173 092 individuals were tested for and 16 490 individuals were diagnosed with SARS-CoV-2 infection. We observed a shift in the proportion of cumulative cases from all cases being related to travel to cases in residents of long-term care homes (20.4% [3368/16 490]), shelters (2.3% [372/16 490]), other congregate settings (20.9% [3446/16 490]) and community settings (35.4% [5834/16 490]), with cumulative travel-related cases at 4.1% (674/16490). Cumulatively, compared with the rest of the population, the diagnosed cases per capita was 64-fold and 19-fold higher among long-term care home and shelter residents, respectively. By May 20, 2020, 76.3% (21 617/28 316) of long-term care home residents and 2.2% (150 077/6 808 890) of the rest of the population had been tested. After adjusting for age and sex, residents of long-term care homes were 2.4 (95% confidence interval [CI] 2.2-2.7) times more likely to test positive, and those who received a diagnosis of COVID-19 were 1.4-fold (95% CI 1.1-1.8) more likely to die than the rest of the population.
INTERPRETATION: Long-term care homes and shelters had disproportionate diagnosed cases per capita, and residents of long-term care homes diagnosed with COVID-19 had higher case fatality than the rest of the population. Heterogeneity across micro-epidemics among specific populations and settings may reflect underlying heterogeneity in transmission risks, necessitating setting-specific COVID-19 prevention and mitigation strategies. Copyright 2020, Joule Inc. or its licensors.

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Mesh:

Year:  2020        PMID: 33037070      PMCID: PMC7567509          DOI: 10.9778/cmajo.20200213

Source DB:  PubMed          Journal:  CMAJ Open        ISSN: 2291-0026


  12 in total

1.  Program Science: an initiative to improve the planning, implementation and evaluation of HIV/sexually transmitted infection prevention programmes.

Authors:  James F Blanchard; Sevgi O Aral
Journal:  Sex Transm Infect       Date:  2010-12-01       Impact factor: 3.519

Review 2.  "Know your epidemic, know your response": a useful approach, if we get it right.

Authors:  David Wilson; Daniel T Halperin
Journal:  Lancet       Date:  2008-08-05       Impact factor: 79.321

3.  Building-level analyses to prospectively detect influenza outbreaks in long-term care facilities: New York City, 2013-2014.

Authors:  Alison Levin-Rector; Beth Nivin; Alice Yeung; Annie D Fine; Sharon K Greene
Journal:  Am J Infect Control       Date:  2015-05-08       Impact factor: 2.918

4.  Prevalence of SARS-CoV-2 Infection in Residents of a Large Homeless Shelter in Boston.

Authors:  Travis P Baggett; Harrison Keyes; Nora Sporn; Jessie M Gaeta
Journal:  JAMA       Date:  2020-06-02       Impact factor: 56.272

5.  Use of Genome Sequencing to Define Institutional Influenza Outbreaks, Toronto, Ontario, Canada, 2014-15.

Authors:  Derek R MacFadden; Allison McGeer; Taryn Athey; Stephen Perusini; Romy Olsha; Aimin Li; AliReza Eshaghi; Jonathan B Gubbay; William P Hanage
Journal:  Emerg Infect Dis       Date:  2018-03       Impact factor: 6.883

6.  Validation study of health administrative data algorithms to identify individuals experiencing homelessness and estimate population prevalence of homelessness in Ontario, Canada.

Authors:  Lucie Richard; Stephen W Hwang; Cheryl Forchuk; Rosane Nisenbaum; Kristin Clemens; Kathryn Wiens; Richard Booth; Mahmoud Azimaee; Salimah Z Shariff
Journal:  BMJ Open       Date:  2019-10-07       Impact factor: 2.692

7.  A systematic review on the causes of the transmission and control measures of outbreaks in long-term care facilities: Back to basics of infection control.

Authors:  Min Hye Lee; Gyeoung Ah Lee; Seong Hyeon Lee; Yeon-Hwan Park
Journal:  PLoS One       Date:  2020-03-10       Impact factor: 3.240

8.  Superspreading and the effect of individual variation on disease emergence.

Authors:  J O Lloyd-Smith; S J Schreiber; P E Kopp; W M Getz
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

9.  Asymptomatic SARS-CoV-2 Infection in Household Contacts of a Healthcare Provider, Wuhan, China.

Authors:  Yi Luo; Edwin Trevathan; Zhengmin Qian; Yirong Li; Jin Li; Wei Xiao; Ning Tu; Zhikun Zeng; Pingzheng Mo; Yong Xiong; Guangming Ye
Journal:  Emerg Infect Dis       Date:  2020-04-24       Impact factor: 6.883

10.  COVID-19: a potential public health problem for homeless populations.

Authors:  Jack Tsai; Michal Wilson
Journal:  Lancet Public Health       Date:  2020-03-11
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  10 in total

1.  Health impact of the first and second wave of COVID-19 and related restrictive measures among nursing home residents: a scoping review.

Authors:  Marjolein E A Verbiest; Annerieke Stoop; Aukelien Scheffelaar; Meriam M Janssen; Leonieke C van Boekel; Katrien G Luijkx
Journal:  BMC Health Serv Res       Date:  2022-07-15       Impact factor: 2.908

2.  Patterns and descriptors of COVID-19 testing and lab-confirmed COVID-19 incidence in Manitoba, Canada, March 2020-May 2021: A population-based study.

Authors:  Christiaan H Righolt; Geng Zhang; Emrah Sever; Krista Wilkinson; Salaheddin M Mahmud
Journal:  Lancet Reg Health Am       Date:  2021-08-13

3.  Understanding COVID-19 Risk in Patients With Immune-Mediated Inflammatory Diseases: A Population-Based Analysis of SARS-CoV-2 Testing.

Authors:  Lihi Eder; Ruth Croxford; Aaron M Drucker; Arielle Mendel; Bindee Kuriya; Zahi Touma; Sindhu R Johnson; Richard Cook; Sasha Bernatsky; Nigil Haroon; Jessica Widdifield
Journal:  Arthritis Care Res (Hoboken)       Date:  2021-09-06       Impact factor: 5.178

4.  Geographic concentration of SARS-CoV-2 cases by social determinants of health in metropolitan areas in Canada: a cross-sectional study.

Authors:  Yiqing Xia; Huiting Ma; Gary Moloney; Héctor A Velásquez García; Monica Sirski; Naveed Z Janjua; David Vickers; Tyler Williamson; Alan Katz; Kristy Yiu; Rafal Kustra; David L Buckeridge; Marc Brisson; Stefan D Baral; Sharmistha Mishra; Mathieu Maheu-Giroux
Journal:  CMAJ       Date:  2022-02-14       Impact factor: 8.262

5.  Prevalence of SARS-CoV-2 infection among people experiencing homelessness in Toronto during the first wave of the COVID-19 pandemic.

Authors:  Linh Luong; Michaela Beder; Rosane Nisenbaum; Aaron Orkin; Jonathan Wong; Cynthia Damba; Ryan Emond; Suvendrini Lena; Vanessa Wright; Mona Loutfy; Cindy Bruce-Barrett; Wilfred Cheung; Yick Kan Cheung; Victoria Williams; Miriam Vanmeurs; Andrew Boozary; Harvey Manning; Joe Hester; Stephen W Hwang
Journal:  Can J Public Health       Date:  2021-12-17

6.  COVID-19 Cases Among Congregate Care Facility Staff by Neighborhood of Residence and Social and Structural Determinants: Observational Study.

Authors:  Huiting Ma; Kristy C Y Yiu; Stefan D Baral; Christine Fahim; Gary Moloney; Dariya Darvin; David Landsman; Adrienne K Chan; Sharon Straus; Sharmistha Mishra
Journal:  JMIR Public Health Surveill       Date:  2022-10-04

Review 7.  COVID-19 prevalence and infection control measures at homeless shelters and hostels in high-income countries: a scoping review.

Authors:  Justine Levesque; Jordan Babando; Nathaniel Loranger; Shantel Johnson; David Pugh
Journal:  Syst Rev       Date:  2022-10-15

8.  SARS-Cov-2 prevalence, transmission, health-related outcomes and control strategies in homeless shelters: Systematic review and meta-analysis.

Authors:  Amir Mohsenpour; Kayvan Bozorgmehr; Sven Rohleder; Jan Stratil; Diogo Costa
Journal:  EClinicalMedicine       Date:  2021-07-23

9.  COVID-19 Testing and Case Rates and Social Contact Among Residential College Students in Connecticut During the 2020-2021 Academic Year.

Authors:  Olivia Schultes; Victoria Clarke; A David Paltiel; Matthew Cartter; Lynn Sosa; Forrest W Crawford
Journal:  JAMA Netw Open       Date:  2021-12-01

Review 10.  A Scoping Review of the Health Impact of the COVID-19 Pandemic on Persons Experiencing Homelessness in North America and Europe.

Authors:  Julia Corey; James Lyons; Austin O'Carroll; Richie Stafford; Jo-Hanna Ivers
Journal:  Int J Environ Res Public Health       Date:  2022-03-09       Impact factor: 3.390

  10 in total

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