Literature DB >> 33035657

In the fungus where it happens: History and future propelling Aspergillus nidulans as the archetype of natural products research.

Lindsay K Caesar1, Neil L Kelleher2, Nancy P Keller3.   

Abstract

In 1990 the first fungal secondary metabolite biosynthetic gene was cloned in Aspergillus nidulans. Thirty years later, >30 biosynthetic gene clusters (BGCs) have been linked to specific natural products in this one fungal species. While impressive, over half of the BGCs in A. nidulans remain uncharacterized and their compounds structurally and functionally unknown. Here, we provide a comprehensive review of past advances that have enabled A. nidulans to rise to its current status as a natural product powerhouse focusing on the discovery and annotation of secondary metabolite clusters. From genome sequencing, heterologous expression, and metabolomics to CRISPR and epigenetic manipulations, we present a guided tour through the evolution of technologies developed and utilized in the last 30 years. These insights provide perspective to future efforts to fully unlock the biosynthetic potential of A. nidulans and, by extension, the potential of other filamentous fungi.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Aspergillus nidulans; Bioinformatics; Biosynthesis; Genomics; Historical perspective; Molecular biology; Natural products

Year:  2020        PMID: 33035657      PMCID: PMC7726033          DOI: 10.1016/j.fgb.2020.103477

Source DB:  PubMed          Journal:  Fungal Genet Biol        ISSN: 1087-1845            Impact factor:   3.495


  148 in total

Review 1.  Fungal secondary metabolism: regulation, function and drug discovery.

Authors:  Nancy P Keller
Journal:  Nat Rev Microbiol       Date:  2019-03       Impact factor: 60.633

2.  Molecular genetic analysis reveals that a nonribosomal peptide synthetase-like (NRPS-like) gene in Aspergillus nidulans is responsible for microperfuranone biosynthesis.

Authors:  Hsu-Hua Yeh; Yi-Ming Chiang; Ruth Entwistle; Manmeet Ahuja; Kuan-Han Lee; Kenneth S Bruno; Tung-Kung Wu; Berl R Oakley; Clay C C Wang
Journal:  Appl Microbiol Biotechnol       Date:  2012-05-25       Impact factor: 4.813

3.  Requirement of monooxygenase-mediated steps for sterigmatocystin biosynthesis by Aspergillus nidulans.

Authors:  N P Keller; C M Watanabe; H S Kelkar; T H Adams; C A Townsend
Journal:  Appl Environ Microbiol       Date:  2000-01       Impact factor: 4.792

Review 4.  Microbial interactions trigger the production of antibiotics.

Authors:  Tina Netzker; Michal Flak; Mario Kc Krespach; Maria C Stroe; Jakob Weber; Volker Schroeckh; Axel A Brakhage
Journal:  Curr Opin Microbiol       Date:  2018-04-24       Impact factor: 7.934

5.  Cloning, mapping and molecular analysis of the pyrG (orotidine-5'-phosphate decarboxylase) gene of Aspergillus nidulans.

Authors:  B R Oakley; J E Rinehart; B L Mitchell; C E Oakley; C Carmona; G L Gray; G S May
Journal:  Gene       Date:  1987       Impact factor: 3.688

6.  N-acetyl-6-hydroxytryptophan oxidase, a developmentally controlled phenol oxidase from Aspergillus nidulans.

Authors:  C E Birse; A J Clutterbuck
Journal:  J Gen Microbiol       Date:  1990-09

7.  A rapid method for promoter exchange in Aspergillus nidulans using recombinant PCR.

Authors:  Majid Zarrin; Abigail C Leeder; Geoffrey Turner
Journal:  Fungal Genet Biol       Date:  2005-01       Impact factor: 3.495

8.  SMURF: Genomic mapping of fungal secondary metabolite clusters.

Authors:  Nora Khaldi; Fayaz T Seifuddin; Geoff Turner; Daniel Haft; William C Nierman; Kenneth H Wolfe; Natalie D Fedorova
Journal:  Fungal Genet Biol       Date:  2010-06-08       Impact factor: 3.495

9.  Aspernidine A and B, prenylated isoindolinone alkaloids from the model fungus Aspergillus nidulans.

Authors:  Kirstin Scherlach; Julia Schuemann; Hans-Martin Dahse; Christian Hertweck
Journal:  J Antibiot (Tokyo)       Date:  2010-05-26       Impact factor: 2.649

10.  Heterologous reconstitution of the intact geodin gene cluster in Aspergillus nidulans through a simple and versatile PCR based approach.

Authors:  Morten Thrane Nielsen; Jakob Blæsbjerg Nielsen; Diana Chinyere Anyaogu; Dianna Chinyere Anyaogu; Dorte Koefoed Holm; Kristian Fog Nielsen; Thomas Ostenfeld Larsen; Uffe Hasbro Mortensen
Journal:  PLoS One       Date:  2013-08-23       Impact factor: 3.240

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  16 in total

Review 1.  Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities.

Authors:  Lindsay K Caesar; Rana Montaser; Nancy P Keller; Neil L Kelleher
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

2.  Heterologous Expression of Fungal Biosynthetic Pathways in Aspergillus nidulans Using Episomal Vectors.

Authors:  Indra Roux; Yit Heng Chooi
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Presence, Mode of Action, and Application of Pathway Specific Transcription Factors in Aspergillus Biosynthetic Gene Clusters.

Authors:  Wenjie Wang; Yuchao Yu; Nancy P Keller; Pinmei Wang
Journal:  Int J Mol Sci       Date:  2021-08-13       Impact factor: 5.923

4.  Comprehensive Guide to Extracting and Expressing Fungal Secondary Metabolites with Aspergillus fumigatus as a Case Study.

Authors:  Grant Nickles; Isabelle Ludwikoski; Jin Woo Bok; Nancy P Keller
Journal:  Curr Protoc       Date:  2021-12

5.  Independent Evolution of a Lysergic Acid Amide in Aspergillus Species.

Authors:  Abigail M Jones; Chey R Steen; Daniel G Panaccione
Journal:  Appl Environ Microbiol       Date:  2021-09-29       Impact factor: 5.005

6.  Secondary metabolites of Hülle cells mediate protection of fungal reproductive and overwintering structures against fungivorous animals.

Authors:  Li Liu; Christoph Sasse; Benedict Dirnberger; Oliver Valerius; Enikő Fekete-Szücs; Rebekka Harting; Daniela E Nordzieke; Stefanie Pöggeler; Petr Karlovsky; Jennifer Gerke; Gerhard H Braus
Journal:  Elife       Date:  2021-10-12       Impact factor: 8.140

Review 7.  Molecular methods unravel the biosynthetic potential of Trichoderma species.

Authors:  Mary L Shenouda; Russell J Cox
Journal:  RSC Adv       Date:  2021-01-18       Impact factor: 3.361

8.  Transcription Factor Repurposing Offers Insights into Evolution of Biosynthetic Gene Cluster Regulation.

Authors:  Wenjie Wang; Milton Drott; Claudio Greco; Dianiris Luciano-Rosario; Pinmei Wang; Nancy P Keller
Journal:  mBio       Date:  2021-07-20       Impact factor: 7.867

9.  Modular Synthetic Biology Toolkit for Filamentous Fungi.

Authors:  László Mózsik; Carsten Pohl; Vera Meyer; Roel A L Bovenberg; Yvonne Nygård; Arnold J M Driessen
Journal:  ACS Synth Biol       Date:  2021-11-02       Impact factor: 5.110

10.  Crowdsourced analysis of fungal growth and branching on microfluidic platforms.

Authors:  Alex Hopke; Alex Mela; Felix Ellett; Derreck Carter-House; Jesús F Peña; Jason E Stajich; Sophie Altamirano; Brian Lovett; Martin Egan; Shiv Kale; Ilkka Kronholm; Paul Guerette; Edyta Szewczyk; Kevin McCluskey; David Breslauer; Hiral Shah; Bryan R Coad; Michelle Momany; Daniel Irimia
Journal:  PLoS One       Date:  2021-09-29       Impact factor: 3.240

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