Literature DB >> 33033144

Tumor DNA as a Cancer Biomarker through the Lens of Colorectal Neoplasia.

Joshua D Cohen1,2,3,4, Brenda Diergaarde5,6, Nickolas Papadopoulos1,2,3, Kenneth W Kinzler1,2,3, Robert E Schoen7,8.   

Abstract

Biomarkers have a wide range of applications in the clinical management of cancer, including screening and therapeutic management. Tumor DNA released from neoplastic cells has become a particularly active area of cancer biomarker development due to the critical role somatic alterations play in the pathophysiology of cancer and the ability to assess released tumor DNA in accessible clinical samples, in particular blood (i.e., liquid biopsy). Many of the early applications of tumor DNA as a biomarker were pioneered in colorectal cancer due to its well-defined genetics and common occurrence, the effectiveness of early detection, and the availability of effective therapeutic options. Herein, in the context of colorectal cancer, we describe how the intended clinical application dictates desired biomarker test performance, how features of tumor DNA provide unique challenges and opportunities for biomarker development, and conclude with specific examples of clinical application of tumor DNA as a biomarker with particular emphasis on early detection.See all articles in this CEBP Focus section, "NCI Early Detection Research Network: Making Cancer Detection Possible." ©2020 American Association for Cancer Research.

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Year:  2020        PMID: 33033144      PMCID: PMC7710619          DOI: 10.1158/1055-9965.EPI-20-0549

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  115 in total

1.  THE RATES AND PATTERNS OF GROWTH OF 375 TUMORS OF THE LARGE INTESTINE AND RECTUM OBSERVED SERIALLY BY DOUBLE CONTRAST ENEMA STUDY (MALMOE TECHNIQUE).

Authors:  S WELIN; J YOUKER; J S SPRATT
Journal:  Am J Roentgenol Radium Ther Nucl Med       Date:  1963-10

2.  Maternal plasma DNA sequencing reveals the genome-wide genetic and mutational profile of the fetus.

Authors:  Y M Dennis Lo; K C Allen Chan; Hao Sun; Eric Z Chen; Peiyong Jiang; Fiona M F Lun; Yama W Zheng; Tak Y Leung; Tze K Lau; Charles R Cantor; Rossa W K Chiu
Journal:  Sci Transl Med       Date:  2010-12-08       Impact factor: 17.956

Review 3.  Clinical consequences of clonal hematopoiesis of indeterminate potential.

Authors:  David P Steensma
Journal:  Hematology Am Soc Hematol Educ Program       Date:  2018-11-30

4.  Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients.

Authors:  Peiyong Jiang; Carol W M Chan; K C Allen Chan; Suk Hang Cheng; John Wong; Vincent Wai-Sun Wong; Grace L H Wong; Stephen L Chan; Tony S K Mok; Henry L Y Chan; Paul B S Lai; Rossa W K Chiu; Y M Dennis Lo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

5.  Detection of aneuploidy in patients with cancer through amplification of long interspersed nucleotide elements (LINEs).

Authors:  Christopher Douville; Simeon Springer; Isaac Kinde; Joshua D Cohen; Ralph H Hruban; Anne Marie Lennon; Nickolas Papadopoulos; Kenneth W Kinzler; Bert Vogelstein; Rachel Karchin
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

6.  Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.

Authors:  Giulio Genovese; Anna K Kähler; Robert E Handsaker; Johan Lindberg; Samuel A Rose; Samuel F Bakhoum; Kimberly Chambert; Eran Mick; Benjamin M Neale; Menachem Fromer; Shaun M Purcell; Oscar Svantesson; Mikael Landén; Martin Höglund; Sören Lehmann; Stacey B Gabriel; Jennifer L Moran; Eric S Lander; Patrick F Sullivan; Pamela Sklar; Henrik Grönberg; Christina M Hultman; Steven A McCarroll
Journal:  N Engl J Med       Date:  2014-11-26       Impact factor: 91.245

7.  Bisulfite-converted duplexes for the strand-specific detection and quantification of rare mutations.

Authors:  Austin K Mattox; Yuxuan Wang; Simeon Springer; Joshua D Cohen; Srinivasan Yegnasubramanian; William G Nelson; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

8.  Heteroplasmic mitochondrial DNA mutations in normal and tumour cells.

Authors:  Yiping He; Jian Wu; Devin C Dressman; Christine Iacobuzio-Donahue; Sanford D Markowitz; Victor E Velculescu; Luis A Diaz; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Nature       Date:  2010-03-03       Impact factor: 49.962

9.  Single-cell, genome-wide sequencing identifies clonal somatic copy-number variation in the human brain.

Authors:  Xuyu Cai; Gilad D Evrony; Hillel S Lehmann; Princess C Elhosary; Bhaven K Mehta; Annapurna Poduri; Christopher A Walsh
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

10.  Vital Signs: Colorectal Cancer Screening Test Use - United States, 2018.

Authors:  Djenaba A Joseph; Jessica B King; Nicole F Dowling; Cheryll C Thomas; Lisa C Richardson
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2020-03-13       Impact factor: 17.586

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  2 in total

Review 1.  The National Cancer Institute Early Detection Research Network: Two Decades of Progress.

Authors:  Robert C Bast; Sudhir Srivastava
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-12       Impact factor: 4.254

2.  Chronotherapy of Early Colon Cancer: Advantage of Morning Dose Schedules.

Authors:  David E Axelrod
Journal:  Cancer Inform       Date:  2022-01-29
  2 in total

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