Literature DB >> 33021499

Improving data quality and expanding BioSAXS experiments to low-molecular-weight and low-concentration protein samples.

Albert Castellví1, Carlos Pascual-Izarra1, Eva Crosas2, Marc Malfois1, Judith Juanhuix1.   

Abstract

The addition of compounds to scavenge the radical species produced during biological small-angle X-ray scattering (BioSAXS) experiments is a common strategy to reduce the effects of radiation damage and produce better quality data. As almost half of the experiments leading to structures deposited in the SASBDB database used scavengers, finding potent scavengers would be advantageous for many experiments. Here, four compounds, three nucleosides and one nitrogenous base, are presented which can act as very effective radical-scavenging additives and increase the critical dose by up to 20 times without altering the stability or reducing the contrast of the tested protein solutions. The efficacy of these scavengers is higher than those commonly used in the field to date, as verified for lysozyme solutions at various concentrations from 7.0 to 0.5 mg ml-1. The compounds are also very efficient at mitigating radiation damage to four proteins with molecular weights ranging from 7 to 240 kDa and pH values from 3 to 8, with the extreme case being catalase at 6.7 mg ml-1, with a scavenging factor exceeding 100. These scavengers can therefore be instrumental in expanding BioSAXS to low-molecular-weight and low-concentration protein samples that were previously inaccessible owing to poor data quality. It is also demonstrated that an increase in the critical dose in standard BioSAXS experiments leads to an increment in the retrieved information, in particular at higher angles, and thus to higher resolution of the model.

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Keywords:  BioSAXS; low-concentration samples; low-molecular-weight samples; protein solution; radiation damage; radiation scavengers

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Year:  2020        PMID: 33021499     DOI: 10.1107/S2059798320010700

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  1 in total

1.  Performance of the new biological small- and wide-angle X-ray scattering beamline 13A at the Taiwan Photon Source.

Authors:  O Shih; K-F Liao; Y-Q Yeh; C-J Su; C-A Wang; J-W Chang; W-R Wu; C-C Liang; C-Y Lin; T-H Lee; C-H Chang; L-C Chiang; C-F Chang; D-G Liu; M-H Lee; C-Y Liu; T-W Hsu; B Mansel; M-C Ho; C-Y Shu; F Lee; E Yen; T-C Lin; U Jeng
Journal:  J Appl Crystallogr       Date:  2022-03-18       Impact factor: 3.304

  1 in total

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