Literature DB >> 33021368

Neural Network Potential Energy Surfaces for Small Molecules and Reactions.

Sergei Manzhos1, Tucker Carrington2.   

Abstract

We review progress in neural network (NN)-based methods for the construction of interatomic potentials from discrete samples (such as ab initio energies) for applications in classical and quantum dynamics including reaction dynamics and computational spectroscopy. The main focus is on methods for building molecular potential energy surfaces (PES) in internal coordinates that explicitly include all many-body contributions, even though some of the methods we review limit the degree of coupling, due either to a desire to limit computational cost or to limited data. Explicit and direct treatment of all many-body contributions is only practical for sufficiently small molecules, which are therefore our primary focus. This includes small molecules on surfaces. We consider direct, single NN PES fitting as well as more complex methods that impose structure (such as a multibody representation) on the PES function, either through the architecture of one NN or by using multiple NNs. We show how NNs are effective in building representations with low-dimensional functions including dimensionality reduction. We consider NN-based approaches to build PESs in the sums-of-product form important for quantum dynamics, ways to treat symmetry, and issues related to sampling data distributions and the relation between PES errors and errors in observables. We highlight combinations of NNs with other ideas such as permutationally invariant polynomials or sums of environment-dependent atomic contributions, which have recently emerged as powerful tools for building highly accurate PESs for relatively large molecular and reactive systems.

Entities:  

Mesh:

Year:  2020        PMID: 33021368     DOI: 10.1021/acs.chemrev.0c00665

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  11 in total

1.  Gaussian Process Regression for Materials and Molecules.

Authors:  Volker L Deringer; Albert P Bartók; Noam Bernstein; David M Wilkins; Michele Ceriotti; Gábor Csányi
Journal:  Chem Rev       Date:  2021-08-16       Impact factor: 60.622

2.  Ab initio neural network MD simulation of thermal decomposition of a high energy material CL-20/TNT.

Authors:  Liqun Cao; Jinzhe Zeng; Bo Wang; Tong Zhu; John Z H Zhang
Journal:  Phys Chem Chem Phys       Date:  2022-05-18       Impact factor: 3.945

Review 3.  Quantitative molecular simulations.

Authors:  Kai Töpfer; Meenu Upadhyay; Markus Meuwly
Journal:  Phys Chem Chem Phys       Date:  2022-06-01       Impact factor: 3.945

Review 4.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

5.  Machine Learning Force Fields.

Authors:  Oliver T Unke; Stefan Chmiela; Huziel E Sauceda; Michael Gastegger; Igor Poltavsky; Kristof T Schütt; Alexandre Tkatchenko; Klaus-Robert Müller
Journal:  Chem Rev       Date:  2021-03-11       Impact factor: 60.622

Review 6.  MLatom 2: An Integrative Platform for Atomistic Machine Learning.

Authors:  Pavlo O Dral; Fuchun Ge; Bao-Xin Xue; Yi-Fan Hou; Max Pinheiro; Jianxing Huang; Mario Barbatti
Journal:  Top Curr Chem (Cham)       Date:  2021-06-08

7.  Theoretical studies on triplet-state driven dissociation of formaldehyde by quasi-classical molecular dynamics simulation on machine-learning potential energy surface.

Authors:  Shichen Lin; Daoling Peng; Weitao Yang; Feng Long Gu; Zhenggang Lan
Journal:  J Chem Phys       Date:  2021-12-07       Impact factor: 3.488

8.  Local Kernel Regression and Neural Network Approaches to the Conformational Landscapes of Oligopeptides.

Authors:  Raimon Fabregat; Alberto Fabrizio; Edgar A Engel; Benjamin Meyer; Veronika Juraskova; Michele Ceriotti; Clemence Corminboeuf
Journal:  J Chem Theory Comput       Date:  2022-02-18       Impact factor: 6.006

9.  Implicitly perturbed Hamiltonian as a class of versatile and general-purpose molecular representations for machine learning.

Authors:  Amin Alibakhshi; Bernd Hartke
Journal:  Nat Commun       Date:  2022-03-10       Impact factor: 17.694

10.  VIB5 database with accurate ab initio quantum chemical molecular potential energy surfaces.

Authors:  Lina Zhang; Shuang Zhang; Alec Owens; Sergei N Yurchenko; Pavlo O Dral
Journal:  Sci Data       Date:  2022-03-11       Impact factor: 8.501

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