Literature DB >> 33016928

Multiomic analysis and immunoprofiling reveal distinct subtypes of human angiosarcoma.

Jason Yongsheng Chan1,2,3, Jing Quan Lim4, Joe Yeong5,6, Vinod Ravi7, Peiyong Guan8, Arnoud Boot8,9, Timothy Kwang Yong Tay5, Sathiyamoorthy Selvarajan5, Nur Diyana Md Nasir5, Jie Hua Loh5, Choon Kiat Ong4,10, Dachuan Huang4, Jing Tan11, Zhimei Li11, Cedric Chuan-Young Ng11, Thuan Tong Tan12, Mikio Masuzawa13, Ken Wing-Kin Sung14,15, Mohamad Farid1,3, Richard Hong Hui Quek1, Ngian Chye Tan16,17, Melissa Ching Ching Teo16, Steven George Rozen8,9,10, Patrick Tan2,6,10,14, Andrew Futreal18, Bin Tean Teh2,6,10,11,19, Khee Chee Soo16,17.   

Abstract

Angiosarcomas are rare, clinically aggressive tumors with limited treatment options and a dismal prognosis. We analyzed angiosarcomas from 68 patients, integrating information from multiomic sequencing, NanoString immuno-oncology profiling, and multiplex immunohistochemistry and immunofluorescence for tumor-infiltrating immune cells. Through whole-genome sequencing (n = 18), 50% of the cutaneous head and neck angiosarcomas exhibited higher tumor mutation burden (TMB) and UV mutational signatures; others were mutationally quiet and non-UV driven. NanoString profiling revealed 3 distinct patient clusters represented by lack (clusters 1 and 2) or enrichment (cluster 3) of immune-related signaling and immune cells. Neutrophils (CD15+), macrophages (CD68+), cytotoxic T cells (CD8+), Tregs (FOXP3+), and PD-L1+ cells were enriched in cluster 3 relative to clusters 2 and 1. Likewise, tumor inflammation signature (TIS) scores were highest in cluster 3 (7.54 vs. 6.71 vs. 5.75, respectively; P < 0.0001). Head and neck angiosarcomas were predominant in clusters 1 and 3, providing the rationale for checkpoint immunotherapy, especially in the latter subgroup with both high TMB and TIS scores. Cluster 2 was enriched for secondary angiosarcomas and exhibited higher expression of DNMT1, BRD3/4, MYC, HRAS, and PDGFRB, in keeping with the upregulation of epigenetic and oncogenic signaling pathways amenable to targeted therapies. Molecular and immunological dissection of angiosarcomas may provide insights into opportunities for precision medicine.

Entities:  

Keywords:  Bioinformatics; Cancer; Cancer immunotherapy; Genetics; Oncology

Year:  2020        PMID: 33016928      PMCID: PMC7598061          DOI: 10.1172/JCI139080

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  71 in total

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Authors:  A W Hudson; P M Howley; H L Ploegh
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

2.  Multiplex Quantitative Analysis of Tumor-Infiltrating Lymphocytes and Immunotherapy Outcome in Metastatic Melanoma.

Authors:  Pok Fai Wong; Wei Wei; James W Smithy; Balazs Acs; Maria I Toki; Kim R M Blenman; Daniel Zelterman; Harriet M Kluger; David L Rimm
Journal:  Clin Cancer Res       Date:  2019-01-07       Impact factor: 12.531

Review 3.  BET Proteins as Targets for Anticancer Treatment.

Authors:  Anastasios Stathis; Francesco Bertoni
Journal:  Cancer Discov       Date:  2017-12-20       Impact factor: 39.397

4.  Recurrent CIC Gene Abnormalities in Angiosarcomas: A Molecular Study of 120 Cases With Concurrent Investigation of PLCG1, KDR, MYC, and FLT4 Gene Alterations.

Authors:  Shih-Chiang Huang; Lei Zhang; Yun-Shao Sung; Chun-Liang Chen; Yu-Chien Kao; Narasimhan P Agaram; Samuel Singer; William D Tap; Sandra D'Angelo; Cristina R Antonescu
Journal:  Am J Surg Pathol       Date:  2016-05       Impact factor: 6.394

5.  Multiplex immunohistochemistry/immunofluorescence (mIHC/IF) for PD-L1 testing in triple-negative breast cancer: a translational assay compared with conventional IHC.

Authors:  Joe Yeong; Tira Tan; Zi Long Chow; Qing Cheng; Bernett Lee; Amanda Seet; Johnathan Xiande Lim; Jeffrey Chun Tatt Lim; Clara Chong Hui Ong; Aye Aye Thike; Sahil Saraf; Benjamin Yong Cheng Tan; Yong Cheng Poh; Sidney Yee; Jin Liu; Elaine Lim; Jabed Iqbal; Rebecca Dent; Puay Hoon Tan
Journal:  J Clin Pathol       Date:  2020-01-22       Impact factor: 3.411

6.  The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research.

Authors:  Corrie A Painter; Esha Jain; Brett N Tomson; Michael Dunphy; Rachel E Stoddard; Beena S Thomas; Alyssa L Damon; Shahrayz Shah; Dewey Kim; Jorge Gómez Tejeda Zañudo; Jason L Hornick; Yen-Lin Chen; Priscilla Merriam; Chandrajit P Raut; George D Demetri; Brian A Van Tine; Eric S Lander; Todd R Golub; Nikhil Wagle
Journal:  Nat Med       Date:  2020-02-10       Impact factor: 53.440

7.  Determining cell type abundance and expression from bulk tissues with digital cytometry.

Authors:  Aaron M Newman; Chloé B Steen; Chih Long Liu; Andrew J Gentles; Aadel A Chaudhuri; Florian Scherer; Michael S Khodadoust; Mohammad S Esfahani; Bogdan A Luca; David Steiner; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Biotechnol       Date:  2019-05-06       Impact factor: 54.908

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

Review 9.  DNA methyltransferases: a novel target for prevention and therapy.

Authors:  Dharmalingam Subramaniam; Ravi Thombre; Animesh Dhar; Shrikant Anant
Journal:  Front Oncol       Date:  2014-05-01       Impact factor: 6.244

10.  Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

Authors:  Nuala A O'Leary; Mathew W Wright; J Rodney Brister; Stacy Ciufo; Diana Haddad; Rich McVeigh; Bhanu Rajput; Barbara Robbertse; Brian Smith-White; Danso Ako-Adjei; Alexander Astashyn; Azat Badretdin; Yiming Bao; Olga Blinkova; Vyacheslav Brover; Vyacheslav Chetvernin; Jinna Choi; Eric Cox; Olga Ermolaeva; Catherine M Farrell; Tamara Goldfarb; Tripti Gupta; Daniel Haft; Eneida Hatcher; Wratko Hlavina; Vinita S Joardar; Vamsi K Kodali; Wenjun Li; Donna Maglott; Patrick Masterson; Kelly M McGarvey; Michael R Murphy; Kathleen O'Neill; Shashikant Pujar; Sanjida H Rangwala; Daniel Rausch; Lillian D Riddick; Conrad Schoch; Andrei Shkeda; Susan S Storz; Hanzhen Sun; Francoise Thibaud-Nissen; Igor Tolstoy; Raymond E Tully; Anjana R Vatsan; Craig Wallin; David Webb; Wendy Wu; Melissa J Landrum; Avi Kimchi; Tatiana Tatusova; Michael DiCuccio; Paul Kitts; Terence D Murphy; Kim D Pruitt
Journal:  Nucleic Acids Res       Date:  2015-11-08       Impact factor: 16.971

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  17 in total

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Journal:  Genes Chromosomes Cancer       Date:  2021-12-11       Impact factor: 5.006

2.  Genomically Complex Human Angiosarcoma and Canine Hemangiosarcoma Establish Convergent Angiogenic Transcriptional Programs Driven by Novel Gene Fusions.

Authors:  Jong Hyuk Kim; Kate Megquier; Rachael Thomas; Aaron L Sarver; Jung Min Song; Yoon Tae Kim; Nuojin Cheng; Ashley J Schulte; Michael A Linden; Paari Murugan; LeAnn Oseth; Colleen L Forster; Ingegerd Elvers; Ross Swofford; Jason Turner-Maier; Elinor K Karlsson; Matthew Breen; Kerstin Lindblad-Toh; Jaime F Modiano
Journal:  Mol Cancer Res       Date:  2021-03-01       Impact factor: 6.333

3.  Clinical implications of systemic and local immune responses in human angiosarcoma.

Authors:  Jason Yongsheng Chan; Grace Fangmin Tan; Joe Yeong; Chee Wee Ong; Dave Yong Xiang Ng; Elizabeth Lee; Joanna Koh; Cedric Chuan-Young Ng; Jing Yi Lee; Wei Liu; Ru Xin Wong; Chin-Ann Johnny Ong; Mohamad Farid; Bin Tean Teh; Khee Chee Soo
Journal:  NPJ Precis Oncol       Date:  2021-02-12

4.  Combined VEGFR and MAPK pathway inhibition in angiosarcoma.

Authors:  Michael J Wagner; Yasmin A Lyons; Jean H Siedel; Robert Dood; Archana S Nagaraja; Monika Haemmerle; Lingegowda S Mangala; Pritha Chanana; Alexander J Lazar; Wei-Lien Wang; Vinod Ravi; Eric C Holland; Anil K Sood
Journal:  Sci Rep       Date:  2021-04-30       Impact factor: 4.379

5.  PARP inhibition in UV-associated angiosarcoma preclinical models.

Authors:  Marije E Weidema; Ingrid M E Desar; Melissa H S Hillebrandt-Roeffen; Anke E M van Erp; Mikio Masuzawa; Uta E Flucke; Winette T A van der Graaf; Yvonne M H Versleijen-Jonkers
Journal:  J Cancer Res Clin Oncol       Date:  2021-06-03       Impact factor: 4.553

6.  New nomograms to predict overall and cancer-specific survival of angiosarcoma.

Authors:  Yuan-Yuan Liu; Bu-Shu Xu; Qiu-Zhong Pan; De-Sheng Weng; Xing Zhang; Rui-Qing Peng
Journal:  Cancer Med       Date:  2021-11-16       Impact factor: 4.452

7.  Therapeutic and immunomodulatory potential of pazopanib in malignant phyllodes tumor.

Authors:  Dave Yong Xiang Ng; Zhimei Li; Elizabeth Lee; Jessica Sook Ting Kok; Jing Yi Lee; Joanna Koh; Cedric Chuan-Young Ng; Abner Herbert Lim; Wei Liu; Sheng Rong Ng; Kah Suan Lim; Xi Xiao Huang; Jing Han Hong; Peiyong Guan; Yirong Sim; Aye Aye Thike; Nur Diyana Md Nasir; Shang Li; Puay Hoon Tan; Bin Tean Teh; Jason Yongsheng Chan
Journal:  NPJ Breast Cancer       Date:  2022-04-01

8.  Genetic context of oncogenic drivers dictates vascular sarcoma development in aP2-Cre mice.

Authors:  Jason A Hanna; Casey G Langdon; Matthew R Garcia; Annaleigh Benton; Nadia A Lanman; David Finkelstein; Jerold E Rehg; Mark E Hatley
Journal:  J Pathol       Date:  2022-02-15       Impact factor: 9.883

9.  Bizarre giant cells in human angiosarcoma exhibit chemoresistance and contribute to poor survival outcomes.

Authors:  Grace Fangmin Tan; Shane Goh; Abner Herbert Lim; Wei Liu; Jing Yi Lee; Vikneswari Rajasegaran; Xin Xiu Sam; Timothy Kwang Yong Tay; Sathiyamoorthy Selvarajan; Cedric Chuan-Young Ng; Bin Tean Teh; Jason Yongsheng Chan
Journal:  Cancer Sci       Date:  2020-11-29       Impact factor: 6.518

10.  Multicenter phase II trial (SWOG S1609, cohort 51) of ipilimumab and nivolumab in metastatic or unresectable angiosarcoma: a substudy of dual anti-CTLA-4 and anti-PD-1 blockade in rare tumors (DART).

Authors:  Michael J Wagner; Megan Othus; Sandip P Patel; Chris Ryan; Ashish Sangal; Benjamin Powers; G Thomas Budd; Adrienne I Victor; Chung-Tsen Hsueh; Rashmi Chugh; Suresh Nair; Kirsten M Leu; Mark Agulnik; Elad Sharon; Edward Mayerson; Melissa Plets; Charles Blanke; Howard Streicher; Young Kwang Chae; Razelle Kurzrock
Journal:  J Immunother Cancer       Date:  2021-08       Impact factor: 13.751

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