| Literature DB >> 33013684 |
Anne T Nies1,2, Stefan Weiss3,4, Elke Schaeffeler1,2, Anke Hannemann4,5, Uwe Völker3,4, Henri Wallaschofski5, Matthias Schwab1,2,6.
Abstract
Bone production, maintenance, and modeling are a well-balanced process involving mineralization by osteoblasts and resorption by osteoclasts. Sex steroid hormones, including their conjugated forms, contribute majorly to maintaining this balance. Recently, variants in the SLC22A9 gene have been associated with osteoporosis in Korean females. We had recently shown that SLC22A9, encoding organic anion transporter 7 (OAT7), is an uptake transporter of estrone sulfate and identified several genetic variants in Europeans leading to functional consequences in vitro. We therefore hypothesized that SLC22A9 genetic variants may contribute to the pathophysiology of osteoporosis in Europeans. To test this hypothesis, we examined the associations of SLC22A9 variants with bone quality, fractures, and bone turnover markers. We genotyped SLC22A9 variants in 5,701 (2,930 female) subjects (age range, 20-93 years) extracted from the population-based Study of Health in Pomerania (SHIP and SHIP-TREND) covered by the Illumina Infinium HumanExome BeadChip version v1.0 (Exome Chip). Descriptive data (e.g., history of fractures), ultrasonography of the calcaneus, as well as serum concentrations of carboxy-terminal telopeptide of type I collagen, amino-terminal propeptide of type I procollagen, and vitamin D were determined. Comprehensive statistical analyses revealed no association between low-frequency and rare SLC22A9 variants and bone quality, fractures, and bone turnover markers. Our results indicate that single genetic SLC22A9 variants do not have a major impact on osteoporosis risk prediction in Europeans, yet findings need to be replicated in larger-scale studies.Entities:
Keywords: SLC22A9; estrone sulfate transporter; human association studies; osteoporosis; sex steroids
Mesh:
Substances:
Year: 2020 PMID: 33013684 PMCID: PMC7461822 DOI: 10.3389/fendo.2020.00532
Source DB: PubMed Journal: Front Endocrinol (Lausanne) ISSN: 1664-2392 Impact factor: 5.555
Baseline characteristics of the study population.
| Age (years) | 49.9 (15.0) | 48.1 (14.5) |
| BMI (kg/m2) | 28.6 (4.4) | 27.5 (5.5) |
| Premenopausal (%) | – | 1,205 (41.1) |
| - Intake of oral contraceptives (%) | – | 28.9% |
| Postmenopausal (%) | 1,725 (58.9) | |
| - Intake of menopausal hormone replacement therapy (%) | – | 6.55% |
| - Self-reported postmenopausal osteoporosis (%) | 9.77%g | |
| Fractures (self-reported) (%) | 192 (6.9) | 223 (7.6) |
| BUA (dB/MHz) | 117.3 (13.8) | 109.3 (14.8) |
| SOS (m/s) | 1,564.3 (37.7) | 1,562.2 (33.5) |
| Bone stiffness index | 96.6 (18.2) | 90.7 (17.6) |
| High risk for osteoporotic fractures (%) | 128 (4.6) | 198 (6.8) |
| PINP (ng/ml) | 45.2 (19.0)a | 46.9 (21.4)b |
| β-CTX (ng/ml) | 0.31 (0.18)c | 0.30 (0.20)d |
| Vitamin D (ng/ml) | 24.0 (9.1)e | 23.8 (9.8)f |
Values are means (SD) or n (%).
BMI, body mass index; BUA, broadband ultrasound attenuation; β-CTX, carboxy-terminal telopeptide of type I collagen; PINP, amino-terminal propeptide of type I procollagen; SOS, speed of sound.
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Minor allele frequencies (MAF) and other annotations of the SLC22A9 genetic variants assessed by the Illumina ExomeChip array or KASP™ sequencing in the SHIP and SHIP-TREND study cohort in comparison to the data for non-Finnish Europeans from the Genome Aggregation Database (gnomAD).
| rs139996395 | exm920540 | A/G | 63137767 | G | p.Asp80Gly | Excluded | 0.0566 |
| rs377211288 | C/T | 63137796 | T | p.Arg90Cys | 0.0451 | 0.0116 | |
| rs200727459 | exm920544 | G/A | 63137797 | A | p.Arg90His | 0 | 0.0116 |
| rs138297035 | exm920554 | G/A | 63138694 | A | p.Gly164Ser | 0.0088 | 0.0031 |
| rs202164269 | exm920556 | C/G | 63141131 | G | p.Phe174Leu | 0.0877 | 0.0741 |
| rs180967669 | exm1726437 | G/C | 63141180 | C | p.Ala191Pro | 0 | 7.8 |
| rs139591412 | exm920572 | C/T | 63141435 | T | p.Ala244Val | 0.0088 | 0.0156 |
| rs79899382 | exm920573 | A/T | 63141443 | T | p.Thr247Ser | 0 | 0 |
| rs3737458 | exm920575 | G/A | 63141471 | A | p.Arg256Gln | 0.0088 | 0.0381 |
| rs201479912 | exm920579 | G/A | 63143137 | A | p.Arg284Gln | 0 | 0.0026 |
| rs200498139 | exm920580 | C/A | 63143153 | A | p.Gln289Lys | 0.0088 | 0.0163 |
| rs1801401 | exm920582 | C/A | 63143227 | A | p.Thr314Asn | 0 | 0.0062 |
| rs201804022 | exm920585 | C/A | 63149670 | A | p.Gln332Lys | 0 | 0.0236 |
| rs141060614 | exm920591 | C/T | 63149746 | T | p.Thr357Met | 0.0088 | 0.0048 |
| rs182247457 | exm920593 | A/G | 63173982 | G | p.Met363Val | 0.0702 | 0.0853 |
| rs138875094 | exm920594 | T/G | 63174033 | G | p.Phe380Val | 0 | 0.0023 |
| rs78019460 | exm920597 | T/C | 63174102 | C | p.Tyr403His | 0 | 0 |
| rs61742518 | exm920601 | C/T | 63175593 | T | p.Thr433Met | 2.6837 | 2.979 |
| rs144303933 | exm920603 | G/A | 63175599 | A | p.Arg435His | 0.0088 | 0.0506 |
| rs139254772 | exm920609 | T/A | 63175663 | A | p.His456Gln | 0.0263 | 0.0148 |
| rs147323107 | exm920610 | C/A | 63175679 | A | p.Pro462Thr | 0 | 0.0016 |
| rs146027075 | exm920613 | A/G | 63176187 | G | p.Ile479Met | 0.9560 | 0.8855 |
| rs149660130 | exm920619 | T/G | 63176294 | G | p.Leu515Arg | 0.0175 | 0.0155 |
| rs142543443 | exm920628 | C/T | 63177324 | T | p.Thr551Met | 0.0088 | 0.0124 |
Contig position refers to chromosome 11, GRCh37 build.
Values from gnomAD v2.1.1 for non-Finnish Europeans (.
Variant excluded due to insufficient call rate.
Variant sequenced by KASP™ technology since it was not included on the ExomeChip.
Genotype distributions for the 14 SLC22A9 genetic variants identified in the SHIP and SHIP-TREND study cohort.
| rs377211288 (NA) | C/T | CC | 5, 543 | 0.0009012 | 0.0009008 | 1 |
| CT | 5 | |||||
| TT | 0 | |||||
| rs138297035 (exm920554) | G/A | GG | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| GA | 1 | |||||
| AA | 0 | |||||
| rs202164269 (exm920556) | C/G | CC | 5, 691 | 0.001754 | 0.001753 | 1 |
| CG | 10 | |||||
| GG | 0 | |||||
| rs139591412 (exm920572) | C/T | CC | 5, 639 | 0.000173 | 0.0001773 | 1 |
| CT | 1 | |||||
| TT | 0 | |||||
| rs3737458 (exm920575) | G/A | GG | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| GA | 1 | |||||
| AA | 0 | |||||
| rs200498139 (exm920580) | C/A | CC | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| CA | 1 | |||||
| AA | 0 | |||||
| rs141060614 (exm920591) | C/T | CC | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| CT | 1 | |||||
| TT | 0 | |||||
| rs182247457 (exm920593) | A/G | AA | 5, 693 | 0.001403 | 0.001402 | 1 |
| AG | 8 | |||||
| GG | 0 | |||||
| rs61742518 (exm920601) | C/T | CC | 5, 397 | 0.05297 | 0.05223 | 0.4424 |
| CT | 302 | |||||
| TT | 2 | |||||
| rs144303933 (exm920603) | G/A | GG | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| GA | 1 | |||||
| AA | 0 | |||||
| rs139254772 (exm920609) | T/A | TT | 5, 698 | 0.0005262 | 0.0005261 | 1 |
| TA | 3 | |||||
| AA | 0 | |||||
| rs146027075 (exm920613) | A/G | AA | 5, 593 | 0.01877 | 0.01894 | 0.4062 |
| AG | 107 | |||||
| GG | 1 | |||||
| rs149660130 (exm920619) | T/G | TT | 5, 699 | 0.0003508 | 0.0003508 | 1 |
| TG | 2 | |||||
| GG | 0 | |||||
| rs142543443 (exm920628) | C/T | CC | 5, 700 | 0.0001754 | 0.0001754 | 1 |
| CT | 1 | |||||
| TT | 0 |
Numbers are for bone quality.
HWE, Hardy–Weinberg equilibrium.
Figure 1Violin plots of β-CTX (A) and PINP (B) distribution in the study cohort stratified for sex. The blue dots indicate the heterozygous samples with significant associations between rs200498139 and β-CTX (A) and rs3737458 and PINP (B). The blue lines indicate the median values; lower and upper black lines indicate the 1st and 3rd quartiles, respectively.