Literature DB >> 33008886

Cis-regulatory units of grass genomes identified by their DNA methylation.

Peng Liu1, R Keith Slotkin2,3.   

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Year:  2020        PMID： 33008886      PMCID： PMC7568314          DOI： 10.1073/pnas.2017729117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  15 in total

1.  The regulatory regions required for B' paramutation and expression are located far upstream of the maize b1 transcribed sequences.

Authors:  Maike Stam; Christiane Belele; Wusirika Ramakrishna; Jane E Dorweiler; Jeffrey L Bennetzen; Vicki L Chandler
Journal:  Genetics       Date:  2002-10       Impact factor: 4.562

2.  Mapping accessible chromatin regions using Sono-Seq.

Authors:  Raymond K Auerbach; Ghia Euskirchen; Joel Rozowsky; Nathan Lamarre-Vincent; Zarmik Moqtaderi; Philippe Lefrançois; Kevin Struhl; Mark Gerstein; Michael Snyder
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-18       Impact factor: 11.205

3.  Grass genomes.

Authors:  J L Bennetzen; P SanMiguel; M Chen; A Tikhonov; M Francki; Z Avramova
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

Review 4.  Chromatin accessibility and the regulatory epigenome.

Authors:  Sandy L Klemm; Zohar Shipony; William J Greenleaf
Journal:  Nat Rev Genet       Date:  2019-04       Impact factor: 53.242

5.  Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.

Authors:  Kelsey A Maher; Marko Bajic; Kaisa Kajala; Mauricio Reynoso; Germain Pauluzzi; Donnelly A West; Kristina Zumstein; Margaret Woodhouse; Kerry Bubb; Michael W Dorrity; Christine Queitsch; Julia Bailey-Serres; Neelima Sinha; Siobhan M Brady; Roger B Deal
Journal:  Plant Cell       Date:  2017-12-11       Impact factor: 11.277

6.  Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors:  Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal:  Nat Methods       Date:  2013-10-06       Impact factor: 28.547

7.  Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Authors:  Nathaniel D Heintzman; Gary C Hon; R David Hawkins; Pouya Kheradpour; Alexander Stark; Lindsey F Harp; Zhen Ye; Leonard K Lee; Rhona K Stuart; Christina W Ching; Keith A Ching; Jessica E Antosiewicz-Bourget; Hui Liu; Xinmin Zhang; Roland D Green; Victor V Lobanenkov; Ron Stewart; James A Thomson; Gregory E Crawford; Manolis Kellis; Bing Ren
Journal:  Nature       Date:  2009-03-18       Impact factor: 49.962

8.  The prevalence, evolution and chromatin signatures of plant regulatory elements.

Authors:  Zefu Lu; Alexandre P Marand; William A Ricci; Christina L Ethridge; Xiaoyu Zhang; Robert J Schmitz
Journal:  Nat Plants       Date:  2019-11-18       Impact factor: 15.793

9.  Single-cell ATAC-seq signal extraction and enhancement with SCATE.

Authors:  Zhicheng Ji; Weiqiang Zhou; Wenpin Hou; Hongkai Ji
Journal:  Genome Biol       Date:  2020-07-03       Impact factor: 13.583

Review 10.  Genomic approaches for studying crop evolution.

Authors:  Mona Schreiber; Nils Stein; Martin Mascher
Journal:  Genome Biol       Date:  2018-09-21       Impact factor: 13.583
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