Literature DB >> 33007200

Structure of the Visual Signaling Complex between Transducin and Phosphodiesterase 6.

Yang Gao1, Gözde Eskici1, Sekar Ramachandran2, Frédéric Poitevin1, Alpay Burak Seven1, Ouliana Panova1, Georgios Skiniotis3, Richard A Cerione4.   

Abstract

Heterotrimeric G proteins communicate signals from activated G protein-coupled receptors to downstream effector proteins. In the phototransduction pathway responsible for vertebrate vision, the G protein-effector complex is composed of the GTP-bound transducin α subunit (GαT·GTP) and the cyclic GMP (cGMP) phosphodiesterase 6 (PDE6), which stimulates cGMP hydrolysis, leading to hyperpolarization of the photoreceptor cell. Here we report a cryo-electron microscopy (cryoEM) structure of PDE6 complexed to GTP-bound GαT. The structure reveals two GαT·GTP subunits engaging the PDE6 hetero-tetramer at both the PDE6 catalytic core and the PDEγ subunits, driving extensive rearrangements to relieve all inhibitory constraints on enzyme catalysis. Analysis of the conformational ensemble in the cryoEM data highlights the dynamic nature of the contacts between the two GαT·GTP subunits and PDE6 that supports an alternating-site catalytic mechanism.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  G protein; G protein-effector complex; Transducin; cryoEM; phosphodiesterase 6; phototransduction

Mesh:

Substances:

Year:  2020        PMID: 33007200      PMCID: PMC7597677          DOI: 10.1016/j.molcel.2020.09.013

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  47 in total

1.  Interaction between cGMP-phosphodiesterase and transducin alpha-subunit in retinal rods. A cross-linking study.

Authors:  A Clerc; P Catty; N Bennett
Journal:  J Biol Chem       Date:  1992-10-05       Impact factor: 5.157

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

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3.  New insights into the role of conserved, essential residues in the GTP binding/GTP hydrolytic cycle of large G proteins.

Authors:  Sharmistha Majumdar; Sekar Ramachandran; Richard A Cerione
Journal:  J Biol Chem       Date:  2006-02-09       Impact factor: 5.157

4.  MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.

Authors:  Shawn Q Zheng; Eugene Palovcak; Jean-Paul Armache; Kliment A Verba; Yifan Cheng; David A Agard
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

5.  Gain-of-function screen of α-transducin identifies an essential phenylalanine residue necessary for full effector activation.

Authors:  Shawn K Milano; Chenyue Wang; Jon W Erickson; Richard A Cerione; Sekar Ramachandran
Journal:  J Biol Chem       Date:  2018-09-28       Impact factor: 5.157

6.  Structures of the Rhodopsin-Transducin Complex: Insights into G-Protein Activation.

Authors:  Yang Gao; Hongli Hu; Sekar Ramachandran; Jon W Erickson; Richard A Cerione; Georgios Skiniotis
Journal:  Mol Cell       Date:  2019-07-09       Impact factor: 17.970

7.  New tools for automated high-resolution cryo-EM structure determination in RELION-3.

Authors:  Jasenko Zivanov; Takanori Nakane; Björn O Forsberg; Dari Kimanius; Wim Jh Hagen; Erik Lindahl; Sjors Hw Scheres
Journal:  Elife       Date:  2018-11-09       Impact factor: 8.140

8.  Conformational transitions of a neurotensin receptor 1-Gi1 complex.

Authors:  Hideaki E Kato; Yan Zhang; Hongli Hu; Carl-Mikael Suomivuori; Francois Marie Ngako Kadji; Junken Aoki; Kaavya Krishna Kumar; Rasmus Fonseca; Daniel Hilger; Weijiao Huang; Naomi R Latorraca; Asuka Inoue; Ron O Dror; Brian K Kobilka; Georgios Skiniotis
Journal:  Nature       Date:  2019-06-26       Impact factor: 49.962

9.  EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.

Authors:  Benjamin A Barad; Nathaniel Echols; Ray Yu-Ruei Wang; Yifan Cheng; Frank DiMaio; Paul D Adams; James S Fraser
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10.  Gctf: Real-time CTF determination and correction.

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  5 in total

Review 1.  Photoreceptor phosphodiesterase (PDE6): activation and inactivation mechanisms during visual transduction in rods and cones.

Authors:  Rick H Cote
Journal:  Pflugers Arch       Date:  2021-04-15       Impact factor: 4.458

Review 2.  New focus on regulation of the rod photoreceptor phosphodiesterase.

Authors:  Sahil Gulati; Krzysztof Palczewski
Journal:  Curr Opin Struct Biol       Date:  2021-05-01       Impact factor: 7.786

3.  Arginylation Regulates G-protein Signaling in the Retina.

Authors:  Marie E Fina; Junling Wang; Pavan Vedula; Hsin-Yao Tang; Anna Kashina; Dawei W Dong
Journal:  Front Cell Dev Biol       Date:  2022-01-21

4.  Transducin Partners Outside the Phototransduction Pathway.

Authors:  Dhiraj Srivastava; Ravi P Yadav; Shivangi M Inamdar; Zhen Huang; Maxim Sokolov; Kimberly Boyd; Nikolai O Artemyev
Journal:  Front Cell Neurosci       Date:  2020-10-14       Impact factor: 5.505

Review 5.  Photoreceptor Phosphodiesterase (PDE6): Structure, Regulatory Mechanisms, and Implications for Treatment of Retinal Diseases.

Authors:  Rick H Cote; Richa Gupta; Michael J Irwin; Xin Wang
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

  5 in total

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