| Literature DB >> 33001715 |
Chuanchuan Ma1, Xiuli Li1, Jianhua Chen1,2,3,4, Zhiqiang Li1,3,4,5, Jian Guan3,4, Yigang Li2,6,7, Shankai Yin3,4, Yongyong Shi1,2,3,4,5,6,7.
Abstract
Objective: Our study was designed to determine if the TRPM1 gene is associated with any of three mental disorders. The project included a cross disorder meta-analysis and association analysis including 141701 cases and 175248 controls. Materials andEntities:
Keywords: TRPM1; association study; bipolar disorder; major depressive disorder; schizophrenia
Mesh:
Substances:
Year: 2020 PMID: 33001715 PMCID: PMC7585623 DOI: 10.1089/gtmb.2019.0096
Source DB: PubMed Journal: Genet Test Mol Biomarkers ISSN: 1945-0257
Detailed Information of the Sample Set
| Gender | Age (years) | |||
|---|---|---|---|---|
| Females | Males | Average age | SD | |
| Schizophrenia | 403 | 845 | 36.44 | 9.00 |
| MDD | 319 | 737 | 34.41 | 12.09 |
| BPD | 760 | 584 | 34.84 | 11.44 |
| Normal controls | 576 | 672 | 30.62 | 11.35 |
MDD, major depressive disorder; BPD, bipolar disorder; SD, standard deviation.
FIG. 1.Locations of the tag SNPs within the TRPM1 gene and all of that distributed across the whole gene. SNP, single nucleotide polymorphism.
Detailed Information of the Testing Single Nucleotide Polymorphisms in the TRPM1 Gene
| SNP ID | Position | Function | Polymorphism | Group | Call rate | H-W |
|---|---|---|---|---|---|---|
| rs12901022 | 31020540 | Intron | C/T | SCZ | 0.977 | 0.5 |
| MDD | 0.99 | 0.321 | ||||
| BD | 0.989 | 0.633 | ||||
| Control | 0.768 | |||||
| rs1035706 | 31050882 | Intron | A/G | SCZ | 0.977 | 0.111 |
| MDD | 0.991 | 0.866 | ||||
| BD | 0.990 | 0.805 | ||||
| Control | 0.84 | |||||
| rs10162727 | 31051683 | Intron | A/G/T | SCZ | 0.975 | 0.999 |
| MDD | 0.991 | 0.999 | ||||
| BD | 0.990 | 0.999 | ||||
| Control | 0.999 | |||||
| rs3784599 | 31067254 | Intron | G/T | SCZ | 0.994 | 0.863 |
| MDD | 0.995 | 0.827 | ||||
| BD | 0.998 | 0.691 | ||||
| Control | 0.993 | |||||
| rs10400821 | 31069401 | Intron & UTR 3prime | A/G | SCZ | 0.973 | 0.013 |
| MDD | 0.989 | 0.218 | ||||
| BD | 0.988 | 0.971 | ||||
| Control | 0.519 | |||||
| rs4779503 | 31080131 | Intron | A/G/T | SCZ | 0.975 | 0.762 |
| MDD | 0.991 | 0.126 | ||||
| BD | 0.990 | 0.19 | ||||
| Control | 0.31 | |||||
| rs12441329 | 31085370 | Intron | C/T | SCZ | 0.969 | 0.615 |
| MDD | 0.973 | 0.79 | ||||
| BD | 0.950 | 0.645 | ||||
| Control | 0.656 | |||||
| rs12910440 | 31088989 | Intron | A/C/G/T | SCZ | 0.962 | 0.315 |
| MDD | 0.973 | 0.769 | ||||
| BD | 0.953 | 0.995 | ||||
| Control | 0.693 |
H-W P, H-W equilibrium p-value; SCZ, schizophrenia; SNP, single nucleotide polymorphism.
Single Site Association Results of the Eight Locus in Schizophrenia, Major Depressive Disorder, Bipolar Disorder Cases, and Normal Controls
| SNP ID | Group | Allele frequency | OR | 95%CI | Allelic | Bonferroni | Genotype frequency | Genotypic | Bonferroni | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs12901022 | T | C | T/T | T/C | C/C | |||||||
| SCZ | 2109 (0.875) | 299 (0.124) | 1.007 | 0.849–1.194 | 0.933 | 0.983 | 928 (0.77) | 253 (0.21) | 23 (0.019) | 0.414 | ||
| MDD | 2293 (0.859) | 375 (0.14) | 1.162 | 0.987–1.366 | 0.069 | 0.278 | 992 (0.743) | 309 (0.231) | 33 (0.024) | 0.067 | ||
| BD | 1826 (0.878) | 252 (0.121) | 0.98 | 0.82–1.171 | 0.829 | 0.903 | 799 (0.769) | 228 (0.219) | 12 (0.011) | 0.948 | ||
| Control | 2160 (0.876) | 304 (0.123) | 944 (0.766) | 272 (0.22) | 16 (0.012) | |||||||
| rs1035706 | G | A | G/G | G/A | A/A | |||||||
| SCZ | 2352 (0.979) | 50 (0.02) | 0.824 | 0.565–1.202 | 0.316 | 0.535 | 1153 (0.96) | 46 (0.038) | 2 (0.001) | 0.13 | ||
| MDD | 2612 (0.978) | 58 (0.021) | 0.861 | 0.599–1.237 | 0.42 | 0.84 | 1277 (0.956) | 58 (0.043) | 0.75 | |||
| BD | 2015 (0.969) | 63 (0.03) | 1.213 | 0.85–1.731 | 0.285 | 0.554 | 976 (0.939) | 63 (0.06) | 0.278 | |||
| Control | 2406 (0.974) | 62 (0.025) | 1172 (0.949) | 62 (0.05) | 0 (0) | |||||||
| rs10162727 | C | T | C/C | T/C | ||||||||
| SCZ | 2395 (0.999) | 1 (4.17e-04) | 1.03 | 0.064–16.478 | 0.983 | 0.983 | 1197 (0.999) | 1 (8.35e-04) | 0.983 | |||
| MDD | 2669 (0.999) | 1 (3.75e-04) | 0.924 | 0.057–14.786 | 0.955 | 0.968 | 1334 (0.999) | 1 (7.49e-04) | 0.955 | |||
| BD | 2077 (0.999) | 1 (4.81 e-04) | 1.187 | 0.074–19.002 | 0.903 | 0.903 | 1038 (0.999) | 1 (9.62e-04) | 0.903 | |||
| Control | 2467 (0.999) | 1 (4.05e-04) | 1233 (0.999) | 1 (8.10e-04) | ||||||||
| rs3784599 | G | T | G/G | T/G | T/T | |||||||
| SCZ | 2102 (0.851) | 368 (0.148) | 1.047 | 0.894–1.226 | 0.564 | 0.752 | 892 (0.722) | 318 (0.257) | 25 (0.02) | 0.807 | ||
| MDD | 2238 (0.838) | 432 (0.161) | 1.154 | 0.991–1.344 | 0.063 | 0.278 | 941 (0.704) | 356 (0.266) | 38 (0.028) | 0.162 | ||
| BD | 1732 (0.848) | 310 (0.151) | 1.07 | 0.908–1.262 | 0.415 | 0.554 | 731 (0.715) | 270 (0.264) | 20 (0.019) | 0.61 | ||
| Control | 2130 (0.856) | 356 (0.143) | 912 (0.733) | 306 (0.246) | 25 (0.02) | |||||||
| rs10400821 | A | G | A/A | G/A | G/G | |||||||
| SCZ | 2227 (0.931) | 163 (0.068) | 1.178 | 0.934–1.485 | 0.164 | 0.535 | 1044 (0.873) | 139 (0.116) | 12 (0.01) | 0.022 | 0.182 | |
| MDD | 2507 (0.941) | 155 (0.058) | 1.154 | 0.991–1.344 | 0.063 | 0.968 | 1184 (0.889) | 139 (0.104) | 8 (0.006) | 0.159 | ||
| BD | 1939 (0.934) | 137 (0.065) | 1.137 | 0.893–1.448 | 0.296 | 0.554 | 906 (0.872) | 127 (0.122) | 5 (0.004) | 0.315 | ||
| Control | 2318 (0.941) | 144 (0.058) | 1089 (0.884) | 140 (0.113) | 2 (0.001) | |||||||
| rs4779503 | A | G | A/A | G/A | G/G | |||||||
| SCZ | 2271 (0.947) | 125 (0.052) | 1.136 | 0.876–1.474 | 0.334 | 0.535 | 1075 (0.897) | 121 (0.101) | 2 (0.001) | 0.204 | ||
| MDD | 2563 (0.959) | 107 (0.04) | 0.862 | 0.658–1.128 | 0.28 | 0.747 | 1233 (0.923) | 97 (0.072) | 5 (0.003) | 0.542 | ||
| BD | 1963 (0.946) | 111 (0.053) | 1.167 | 0.893–1.448 | 0.256 | 0.554 | 926 (0.892) | 111 (0.107) | 0 (0) | 0.023 | 0.187 | |
| Control | 2354 (0.953) | 114 (0.046) | 1125 (0.911) | 104 (0.084) | 5 (0.004) | |||||||
| rs12441329 | C | T | C/C | T/C | T/T | |||||||
| SCZ | 2089 (0.847) | 375 (0.152) | 0.924 | 0.791–1.079 | 0.321 | 0.535 | 890 (0.722) | 309 (0.25) | 33 (0.026) | 0.247 | ||
| MDD | 2228 (0.832) | 448 (0.167) | 1.035 | 0.892–1.202 | 0.644 | 0.968 | 931 (0.695) | 366 (0.273) | 41 (0.03) | 0.468 | ||
| BD | 1735 (0.85) | 305 (0.149) | 0.905 | 0.768–1.066 | 0.233 | 0.554 | 734 (0.719) | 267 (0.261) | 19 (0.018) | 0.479 | ||
| Control | 1983 (0.837) | 385 (0.162) | 826 (0.697) | 331 (0.279) | 27 (0.022) | |||||||
| rs12910440 | C | G | C/C | G/C | G/G | |||||||
| SCZ | 2039 (0.842) | 381 (0.157) | 0.898 | 0.771–1.046 | 0.169 | 0.535 | 866 (0.715) | 307 (0.253) | 37 (0.03) | 0.098 | ||
| MDD | 2203 (0.826) | 463 (0.173) | 1.01 | 0.873–1.169 | 0.885 | 0.968 | 914 (0.685) | 375 (0.281) | 44 (0.033) | 0.528 | ||
| BD | 1705 (0.838) | 329 (0.161) | 0.928 | 0.791–1.087 | 0.356 | 0.554 | 715 (0.703) | 275 (0.27) | 27 (0.026) | 0.528 | ||
| Control | 1967 (0.827) | 409 (0.172) | 810 (0.681) | 347(0.292) | 31 (0.026) | |||||||
FIG. 2.Linkage disequilibrium among the eight SNPs in CTRL, SCZ, MDD, and BPD groups. The pairwise D'values are presented in the matrices. Dark gray implicates relatively strong linkage disequilibrium, and vice versa. CTRL, control; MDD, major depressive disorder; BPD, bipolar disorder; SCZ, schizophrenia.
FIG. 3.Forest plot of the association between rs10162727 and schizophrenia in a random effects model. The point represents the OR, and horizontal lines indicate 95% CI for each study. The diamond illustrates that summary OR and 95% CI by random effect calculations.