Literature DB >> 32995929

Transcriptomic Analysis Reveals Common Adaptation Mechanisms Under Different Stresses for Moderately Piezophilic Bacteria.

Han Wang1, Yu Zhang2,3,4, Douglas H Bartlett5, Xiang Xiao1,6,7.   

Abstract

Piezophiles, by the commonly accepted definition, grow faster under high hydrostatic pressure (HHP) than under ambient pressure and are believed to exist only in pressurized environments where life has adapted to HHP during evolution. However, recent findings suggest that piezophiles have developed a common adaptation strategy to cope with multiple types of stresses including HHP. These results raise a question on the ecological niches of piezophiles: are piezophiles restricted to habitats with HHP? In this study, we observed that the bacterial strains Sporosarcina psychrophila DSM 6497 and Lysinibacillus sphaericus LMG 22257, which were isolated from surface environments and then transferred under ambient pressure for half a century, possess moderately piezophilic characteristics with optimal growth pressures of 7 and 20 MPa, respectively. Their tolerance to HHP was further enhanced by MgCl2 supplementation under the highest tested pressure of 50 MPa. Transcriptomic analysis was performed to compare gene expression with and without MgCl2 supplementation under 50 MPa for S. psychrophila DSM 6497. Among 4390 genes or transcripts obtained, 915 differentially expressed genes (DEGs) were identified. These DEGs are primarily associated with the antioxidant defense system, intracellular compatible solute accumulation, and membrane lipid biosynthesis, which have been reported to be essential for cells to cope with HHP. These findings indicate no in situ pressure barrier for piezophile isolation, and cells may adopt a common adaptation strategy to cope with different stresses.

Entities:  

Keywords:  Common adaptation; High pressure; MgCl2; Piezophile; Stress; Transcriptome

Year:  2020        PMID: 32995929     DOI: 10.1007/s00248-020-01609-3

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  41 in total

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2.  Conjugal vectors for cloning, expression, and insertional mutagenesis in gram-negative bacteria.

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Journal:  Biotechniques       Date:  2005-05       Impact factor: 1.993

3.  High Pressure Enhances the Growth Rate of the Thermophilic Archaebacterium Methanococcus thermolithotrophicus without Extending Its Temperature Range.

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Journal:  Appl Environ Microbiol       Date:  1988-05       Impact factor: 4.792

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Journal:  Science       Date:  1979-08-24       Impact factor: 47.728

5.  The Polyextremophilic Bacterium Clostridium paradoxum Attains Piezophilic Traits by Modulating Its Energy Metabolism and Cell Membrane Composition.

Authors:  Alberto Scoma; Paloma Garrido-Amador; Søren Dollerup Nielsen; Hans Røy; Kasper Urup Kjeldsen
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

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Authors:  Ying Chen; Fengping Wang; Jun Xu; Muhammad Aamer Mehmood; Xiang Xiao
Journal:  ISME J       Date:  2010-12-02       Impact factor: 10.302

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Journal:  Eur J Biochem       Date:  1994-04-15

8.  Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life.

Authors:  Xiang Zeng; Jean-Louis Birrien; Yves Fouquet; Georgy Cherkashov; Mohamed Jebbar; Joël Querellou; Philippe Oger; Marie-Anne Cambon-Bonavita; Xiang Xiao; Daniel Prieur
Journal:  ISME J       Date:  2009-03-19       Impact factor: 10.302

9.  Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains.

Authors:  Stefano Campanaro; Alessandro Vezzi; Nicola Vitulo; Federico M Lauro; Michela D'Angelo; Francesca Simonato; Alessandro Cestaro; Giorgio Malacrida; Giulio Bertoloni; Giorgio Valle; Douglas H Bartlett
Journal:  BMC Genomics       Date:  2005-09-14       Impact factor: 3.969

10.  Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3.

Authors:  Fengping Wang; Jianbin Wang; Huahua Jian; Bing Zhang; Shengkang Li; Feng Wang; Xiaowei Zeng; Lei Gao; Douglas Hoyt Bartlett; Jun Yu; Songnian Hu; Xiang Xiao
Journal:  PLoS One       Date:  2008-04-09       Impact factor: 3.240

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  4 in total

1.  Novel primers for 16S rRNA gene-based archaeal and bacterial community analysis in oceanic trench sediments.

Authors:  Na Yang; Chen Tian; Yongxin Lv; Jialin Hou; Zhifeng Yang; Xiang Xiao; Yu Zhang
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-29       Impact factor: 4.813

2.  Response mechanism of Vibrio parahaemolyticus at high pressure revealed by transcriptomic analysis.

Authors:  Shanquan Liang; Tan Zhang; Zhihao Liu; Jingyu Wang; Changliang Zhu; Qing Kong; Xiaodan Fu; Haijin Mou
Journal:  Appl Microbiol Biotechnol       Date:  2022-07-25       Impact factor: 5.560

3.  Stimulated Organic Carbon Cycling and Microbial Community Shift Driven by a Simulated Cold-Seep Eruption.

Authors:  Yongxin Lv; Shanshan Yang; Xiang Xiao; Yu Zhang
Journal:  mBio       Date:  2022-03-01       Impact factor: 7.786

4.  Microbiome Restructuring: Dominant Coral Bacterium Endozoicomonas Species Respond Differentially to Environmental Changes.

Authors:  Kshitij Tandon; Yu-Jing Chiou; Sheng-Ping Yu; Hernyi Justin Hsieh; Chih-Ying Lu; Ming-Tsung Hsu; Pei-Wen Chiang; Hsing-Ju Chen; Naohisa Wada; Sen-Lin Tang
Journal:  mSystems       Date:  2022-06-15       Impact factor: 7.324

  4 in total

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