| Literature DB >> 32994900 |
Sherein G Elgendy1, Sherine A Aly1, Rawhia Fathy1, Enas A E Deaf1, Naglaa H Abu Faddan2, Muhamad R Abdel Hameed3.
Abstract
BACKGROUND AND OBJECTIVES: Clostridium difficile infection (CDI) has become a significant healthcare-associated infection throughout the world and is particularly important in developing countries. This study aimed to investigate clinical characterization and risk factors related to toxigenic C. difficile infection in adult and pediatric patients, antimicrobial susceptibility pattern. Also, to evaluate different diagnostic methods for rapid detection of C. difficile associated diarrhea (CDAD) in Egypt.Entities:
Keywords: Clostridium difficile; Risk factor; Toxigenic culture; Toxin genes
Year: 2020 PMID: 32994900 PMCID: PMC7502137 DOI: 10.18502/ijm.v12i4.3932
Source DB: PubMed Journal: Iran J Microbiol ISSN: 2008-3289
Primers used in PCR for molecular characterization of C. difficile, (Lemee et al. 2004)
| 5′-AAAGAAGCTACTAAGGGTACAAA-3′ | 230 | ||
| 5′-CATAATATTGGGTCTATTCCTAC-3 | |||
| 5′-AGATTCCTATATTTACATGACAATAT-3′ | 369 | ||
| 5′-GTATCAGGCATAAAGTAATATACTTT-3′ | |||
| 5′-GGAAAAGAGAATGGTTTTATTAA-3′ | 160 | ||
| 5′-ATCTTTAGTTATAACTTTGACATCTTT-3 |
Fig. 1.Gel electrophoresis (A) Detection of tpi gene at 230 bp; Lane 1: DNA molecular weight marker, Lanes (2–15) positive samples. Lane 16: negative isolate. (B) Detection of tcdA gene at 369 bp; Lane 1: DNA molecular weight marker, Lanes (2–15) positive samples. Lane 16: negative isolate. (C) Detection of tcdB gene at 160 bp; Lane 1: DNA molecular weight marker, Lanes (3–10) positive samples, Lane 2, 11: negative isolates.
Risk factors for CDAD in adult ICU
| Diabetes | ||||||
| Yes | 12 | 5 | 41.7 | 2.08 | 2.86 | <0.05 |
| No | 25 | 5 | 20 | |||
| Antibiotic treatment | ||||||
| Yes | 26 | 9 | 38.5 | 3.81 | 5.29 | <0.05 |
| No | 11 | 1 | 9.00 | |||
| Sex | ||||||
| Females | 10 | 3 | 30 | 1.15 | 1.22 | <0.05 |
| Males | 27 | 7 | 25.9 | |||
| Malnutrition | ||||||
| Yes | 11 | 5 | 45.5 | 2.36 | 3.50 | <0.05 |
| No | 26 | 5 | 19 | |||
| Hematological malignancy on chemotherapy | ||||||
| Yes | 12 | 6 | 50 | 3.12 | 5.25 | <0.05 |
| No | 25 | 4 | 16 | |||
| Neutropenia (Aplastic anemia induced) | ||||||
| Yes | 9 | 3 | 33.3 | 1.33 | 1.50 | <0.05 |
| No | 28 | 7 | 25 | |||
| Antacid intake | ||||||
| Yes | 27 | 9 | 33.3 | 3.33 | 4.50 | 0.001 |
| No | 10 | 1 | 10 | |||
| Ryle feeding | ||||||
| Yes | 8 | 7 | 87.5 | 8.45 | 60.67 | 0.001 |
| No | 29 | 3 | 10 | |||
| Urinary catheterization | ||||||
| Yes | 17 | 4 | 23.5 | 0.78 | 0.718 | >0.05 |
| No | 20 | 6 | 30 |
RR: Relative risk, O.R. Odds ratio,
P values less than 0.05 was considered statistically significant,
P values = 0.001 was considered statistically highly significant
Risk factors for CDAD in children
| Recurrence | ||||||
| Yes | 19 | 11 | 58 | 7.33 | 16.04 | 0.001 |
| No | 76 | 6 | 7.9 | |||
| Ryle feeding | ||||||
| Yes | 5 | 4 | 80 | 5.538 | 23.69 | 0.001 |
| No | 90 | 13 | 14 | |||
| Antacid intake | ||||||
| Yes | 64 | 16 | 25 | 7.75 | 10.00 | <0.05 |
| No | 31 | 1 | 3 | |||
| Neutropenia | ||||||
| Yes | 23 | 14 | 60 | 14.61 | 35.78 | 0.001 |
| No | 72 | 3 | 4 | |||
| ICU admission | ||||||
| Yes | 10 | 7 | 70 | 5.93 | 17.5 | 0.001 |
| No | 85 | 10 | 11.7 |
RR: Relative risk, O.R. Odds ratio,
P values less than 0.05 was considered statistically significant,
P values = 0.001 was considered statistically highly significant
Antimicrobial susceptibility of toxigenic C. difficile isolates
| Benzyl penicillin | 13 | 48.2 | 2 | 7.4 | 12 | 44.4 |
| Piperacillin / tazobactam | 8 | 29.6 | 4 | 14.8 | 15 | 55.6 |
| Amoxicillin Clavulanic acid | 10 | 37.0 | 7 | 26.0 | 10 | 37.0 |
| Ceftriaxone | 7 | 25.9 | 2 | 7.4 | 18 | 66.7 |
| Vancomycin | 18 | 66.7 | 8 | 29.6 | 1 | 3.7 |
| Ciprofloxacin | 12 | 44.4 | 7 | 26.0 | 8 | 29.6 |
| Moxifloxacin | 20 | 74.1 | 2 | 7.4 | 5 | 18.5 |
| Levofloxacin | 19 | 70.4 | 2 | 7.4 | 6 | 22.2 |
| Tetracycline | 7 | 25.9 | 2 | 7.4 | 18 | 66.7 |
| Chloramphenicol | 11 | 40.7 | 1 | 3.7 | 15 | 55.6 |
| Impenem | 17 | 62.9 | 3 | 11.1 | 7 | 26.0 |
| Metronidazole | 13 | 48.2 | 1 | 3.6 | 13 | 48.2 |
No = number of samples, % = percentage is calculated according to number of samples obtained