Literature DB >> 32989249

Global hyperactivation of enhancers stabilizes human and mouse naive pluripotency through inhibition of CDK8/19 Mediator kinases.

Cian J Lynch1,2, Raquel Bernad1,2, Ana Martínez-Val3, Marta N Shahbazi4,5, Sandrina Nóbrega-Pereira6, Isabel Calvo1,2, Carmen Blanco-Aparicio7, Carolina Tarantino8, Elena Garreta8, Laia Richart-Ginés9, Noelia Alcazar1,2, Osvaldo Graña-Castro10, Gonzalo Gómez-Lopez10, Irene Aksoy11, Maribel Muñoz-Martín1,2, Sonia Martinez7, Sagrario Ortega12, Susana Prieto13, Elisabeth Simboeck13, Alain Camasses13, Camille Stephan-Otto Attolini14, Agustin F Fernandez15, Marta I Sierra15, Mario F Fraga15, Joaquin Pastor7, Daniel Fisher13, Nuria Montserrat8,16,17, Pierre Savatier11, Javier Muñoz3, Magdalena Zernicka-Goetz4,18, Manuel Serrano19,20,21.   

Abstract

Pluripotent stem cells (PSCs) transition between cell states in vitro, reflecting developmental changes in the early embryo. PSCs can be stabilized in the naive state by blocking extracellular differentiation stimuli, particularly FGF-MEK signalling. Here, we report that multiple features of the naive state in human and mouse PSCs can be recapitulated without affecting FGF-MEK signalling or global DNA methylation. Mechanistically, chemical inhibition of CDK8 and CDK19 (hereafter CDK8/19) kinases removes their ability to repress the Mediator complex at enhancers. CDK8/19 inhibition therefore increases Mediator-driven recruitment of RNA polymerase II (RNA Pol II) to promoters and enhancers. This efficiently stabilizes the naive transcriptional program and confers resistance to enhancer perturbation by BRD4 inhibition. Moreover, naive pluripotency during embryonic development coincides with a reduction in CDK8/19. We conclude that global hyperactivation of enhancers drives naive pluripotency, and this can be achieved in vitro by inhibiting CDK8/19 kinase activity. These principles may apply to other contexts of cellular plasticity.

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Year:  2020        PMID: 32989249     DOI: 10.1038/s41556-020-0573-1

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.213


  81 in total

1.  The human CDK8 subcomplex is a molecular switch that controls Mediator coactivator function.

Authors:  Matthew T Knuesel; Krista D Meyer; Carrie Bernecky; Dylan J Taatjes
Journal:  Genes Dev       Date:  2009-02-15       Impact factor: 11.361

2.  A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.

Authors:  Han Chen; Chunyan Li; Xinxin Peng; Zhicheng Zhou; John N Weinstein; Han Liang
Journal:  Cell       Date:  2018-04-05       Impact factor: 41.582

Review 3.  The Mediator Complex: At the Nexus of RNA Polymerase II Transcription.

Authors:  Célia Jeronimo; François Robert
Journal:  Trends Cell Biol       Date:  2017-08-01       Impact factor: 20.808

4.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 5.  A Phase Separation Model for Transcriptional Control.

Authors:  Denes Hnisz; Krishna Shrinivas; Richard A Young; Arup K Chakraborty; Phillip A Sharp
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 6.  Mediator kinase module and human tumorigenesis.

Authors:  Alison D Clark; Marieke Oldenbroek; Thomas G Boyer
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-07-16       Impact factor: 8.250

Review 7.  The selection and function of cell type-specific enhancers.

Authors:  Sven Heinz; Casey E Romanoski; Christopher Benner; Christopher K Glass
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

8.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

9.  Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics.

Authors:  Zachary C Poss; Christopher C Ebmeier; Aaron T Odell; Anupong Tangpeerachaikul; Thomas Lee; Henry E Pelish; Matthew D Shair; Robin D Dowell; William M Old; Dylan J Taatjes
Journal:  Cell Rep       Date:  2016-03-31       Impact factor: 9.423

Review 10.  The Mediator complex: a central integrator of transcription.

Authors:  Benjamin L Allen; Dylan J Taatjes
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-18       Impact factor: 94.444

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  10 in total

Review 1.  The Mediator kinase module: an interface between cell signaling and transcription.

Authors:  Olivia Luyties; Dylan J Taatjes
Journal:  Trends Biochem Sci       Date:  2022-02-19       Impact factor: 13.807

2.  Inhibition of CDK8/19 Mediator kinase potentiates HER2-targeting drugs and bypasses resistance to these agents in vitro and in vivo.

Authors:  Xiaokai Ding; Amanda C Sharko; Martina S J McDermott; Gary P Schools; Alexander Chumanevich; Hao Ji; Jing Li; Li Zhang; Zachary T Mack; Vitali Sikirzhytski; Michael Shtutman; Laura Ivers; Norma O'Donovan; John Crown; Balázs Győrffy; Mengqian Chen; Igor B Roninson; Eugenia V Broude
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

3.  The Inhibition of CDK8/19 Mediator Kinases Prevents the Development of Resistance to EGFR-Targeting Drugs.

Authors:  Amanda C Sharko; Chang-Uk Lim; Martina S J McDermott; Chuck Hennes; Kingsavanh P Philavong; Tiffanie Aiken; Victor V Tatarskiy; Igor B Roninson; Eugenia V Broude
Journal:  Cells       Date:  2021-01-12       Impact factor: 6.600

4.  Dissection of two routes to naïve pluripotency using different kinase inhibitors.

Authors:  Ana Martinez-Val; Cian J Lynch; Isabel Calvo; Pilar Ximénez-Embún; Fernando Garcia; Eduardo Zarzuela; Manuel Serrano; Javier Munoz
Journal:  Nat Commun       Date:  2021-03-25       Impact factor: 14.919

5.  Stability of Imprinting and Differentiation Capacity in Naïve Human Cells Induced by Chemical Inhibition of CDK8 and CDK19.

Authors:  Raquel Bernad; Cian J Lynch; Rocio G Urdinguio; Camille Stephan-Otto Attolini; Mario F Fraga; Manuel Serrano
Journal:  Cells       Date:  2021-04-12       Impact factor: 6.600

Review 6.  Comprehensive Review of Uterine Fibroids: Developmental Origin, Pathogenesis, and Treatment.

Authors:  Qiwei Yang; Michal Ciebiera; Maria Victoria Bariani; Mohamed Ali; Hoda Elkafas; Thomas G Boyer; Ayman Al-Hendy
Journal:  Endocr Rev       Date:  2022-07-13       Impact factor: 25.261

Review 7.  The Mediator complex as a master regulator of transcription by RNA polymerase II.

Authors:  William F Richter; Shraddha Nayak; Janet Iwasa; Dylan J Taatjes
Journal:  Nat Rev Mol Cell Biol       Date:  2022-06-20       Impact factor: 113.915

8.  CDK8 and CDK19 regulate intestinal differentiation and homeostasis via the chromatin remodeling complex SWI/SNF.

Authors:  Marius V Dannappel; Danxi Zhu; Xin Sun; Hui Kheng Chua; Marle Poppelaars; Monica Suehiro; Subash Khadka; Terry Cc Lim Kam Sian; Dhanya Sooraj; Melissa Loi; Hugh Gao; Daniel Croagh; Roger J Daly; Pouya Faridi; Thomas G Boyer; Ron Firestein
Journal:  J Clin Invest       Date:  2022-10-17       Impact factor: 19.456

9.  The Cdk8 kinase module regulates interaction of the Mediator complex with RNA polymerase II.

Authors:  Sara Osman; Eusra Mohammad; Michael Lidschreiber; Alexandra Stuetzer; Fanni Laura Bazsó; Kerstin C Maier; Henning Urlaub; Patrick Cramer
Journal:  J Biol Chem       Date:  2021-04-29       Impact factor: 5.157

10.  Apoptosis, G1 Phase Stall, and Premature Differentiation Account for Low Chimeric Competence of Human and Rhesus Monkey Naive Pluripotent Stem Cells.

Authors:  Irène Aksoy; Cloé Rognard; Anaïs Moulin; Guillaume Marcy; Etienne Masfaraud; Florence Wianny; Véronique Cortay; Angèle Bellemin-Ménard; Nathalie Doerflinger; Manon Dirheimer; Chloé Mayère; Pierre-Yves Bourillot; Cian Lynch; Olivier Raineteau; Thierry Joly; Colette Dehay; Manuel Serrano; Marielle Afanassieff; Pierre Savatier
Journal:  Stem Cell Reports       Date:  2020-12-30       Impact factor: 7.765

  10 in total

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