Literature DB >> 32988634

Dynamic Chromatin Structure and Epigenetics Control the Fate of Malaria Parasites.

Thomas Hollin1, Mohit Gupta1, Todd Lenz1, Karine G Le Roch2.   

Abstract

Multiple hosts and various life cycle stages prompt the human malaria parasite, Plasmodium falciparum, to acquire sophisticated molecular mechanisms to ensure its survival, spread, and transmission to its next host. To face these environmental challenges, increasing evidence suggests that the parasite has developed complex and complementary layers of regulatory mechanisms controlling gene expression. Here, we discuss the recent developments in the discovery of molecular components that contribute to cell replication and differentiation and highlight the major contributions of epigenetics, transcription factors, and nuclear architecture in controlling gene regulation and life cycle progression in Plasmodium spp.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Plasmodium; chromatin architecture; epigenetics; malaria; transcription factor

Mesh:

Substances:

Year:  2020        PMID: 32988634      PMCID: PMC7755682          DOI: 10.1016/j.tig.2020.09.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  118 in total

1.  Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.

Authors:  Houda Belaghzal; Job Dekker; Johan H Gibcus
Journal:  Methods       Date:  2017-04-18       Impact factor: 3.608

2.  Plasmodium falciparum: Preinitiation complex occupancy of active and inactive promoters during erythrocytic stage.

Authors:  Anusha M Gopalakrishnan; Lilian A Nyindodo; M Ross Fergus; Carlos López-Estraño
Journal:  Exp Parasitol       Date:  2008-10-07       Impact factor: 2.011

3.  Nucleosome landscape and control of transcription in the human malaria parasite.

Authors:  Nadia Ponts; Elena Y Harris; Jacques Prudhomme; Ivan Wick; Colleen Eckhardt-Ludka; Glenn R Hicks; Gary Hardiman; Stefano Lonardi; Karine G Le Roch
Journal:  Genome Res       Date:  2010-01-06       Impact factor: 9.043

4.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

5.  The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum.

Authors:  Zbynek Bozdech; Manuel Llinás; Brian Lee Pulliam; Edith D Wong; Jingchun Zhu; Joseph L DeRisi
Journal:  PLoS Biol       Date:  2003-08-18       Impact factor: 8.029

6.  Recruitment of PfSET2 by RNA polymerase II to variant antigen encoding loci contributes to antigenic variation in P. falciparum.

Authors:  Uchechi E Ukaegbu; Sandeep P Kishore; Dacia L Kwiatkowski; Chethan Pandarinath; Noa Dahan-Pasternak; Ron Dzikowski; Kirk W Deitsch
Journal:  PLoS Pathog       Date:  2014-01-02       Impact factor: 6.823

7.  Genome-wide profiling of chromosome interactions in Plasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation.

Authors:  Jacob E Lemieux; Sue A Kyes; Thomas D Otto; Avi I Feller; Richard T Eastman; Robert A Pinches; Matthew Berriman; Xin-Zhuan Su; Chris I Newbold
Journal:  Mol Microbiol       Date:  2013-09-30       Impact factor: 3.501

8.  A cascade of DNA-binding proteins for sexual commitment and development in Plasmodium.

Authors:  Abhinav Sinha; Katie R Hughes; Katarzyna K Modrzynska; Thomas D Otto; Claudia Pfander; Nicholas J Dickens; Agnieszka A Religa; Ellen Bushell; Anne L Graham; Rachael Cameron; Bjorn F C Kafsack; April E Williams; Manuel Llinas; Matthew Berriman; Oliver Billker; Andrew P Waters
Journal:  Nature       Date:  2014-02-23       Impact factor: 49.962

9.  Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

Authors:  David F Read; Kate Cook; Yang Y Lu; Karine G Le Roch; William Stafford Noble
Journal:  PLoS Comput Biol       Date:  2019-09-11       Impact factor: 4.475

10.  Dissecting the role of PfAP2-G in malaria gametocytogenesis.

Authors:  Gabrielle A Josling; Timothy J Russell; Jarrett Venezia; Lindsey Orchard; Riëtte van Biljon; Heather J Painter; Manuel Llinás
Journal:  Nat Commun       Date:  2020-03-20       Impact factor: 14.919

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  5 in total

1.  Genome-wide landscape of ApiAP2 transcription factors reveals a heterochromatin-associated regulatory network during Plasmodium falciparum blood-stage development.

Authors:  Xiaomin Shang; Changhong Wang; Yanting Fan; Gangqiang Guo; Fei Wang; Yuemeng Zhao; Fei Sheng; Jianxia Tang; Xiaoqin He; Xinyu Yu; Meihua Zhang; Guoding Zhu; Shigang Yin; Jianbing Mu; Richard Culleton; Jun Cao; Mei Jiang; Qingfeng Zhang
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

Review 2.  The Modular Circuitry of Apicomplexan Cell Division Plasticity.

Authors:  Marc-Jan Gubbels; Isabelle Coppens; Kourosh Zarringhalam; Manoj T Duraisingh; Klemens Engelberg
Journal:  Front Cell Infect Microbiol       Date:  2021-04-12       Impact factor: 5.293

Review 3.  Peculiarities of Plasmodium falciparum Gene Regulation and Chromatin Structure.

Authors:  Maria Theresia Watzlowik; Sujaan Das; Markus Meissner; Gernot Längst
Journal:  Int J Mol Sci       Date:  2021-05-13       Impact factor: 5.923

4.  The Transcription Factor PfAP2-O Influences Virulence Gene Transcription and Sexual Development in Plasmodium falciparum.

Authors:  Eliana F G Cubillos; Isadora Oliveira Prata; Wesley Luzetti Fotoran; Lisa Ranford-Cartwright; Gerhard Wunderlich
Journal:  Front Cell Infect Microbiol       Date:  2021-06-28       Impact factor: 5.293

5.  Chemogenomics identifies acetyl-coenzyme A synthetase as a target for malaria treatment and prevention.

Authors:  Robert L Summers; Charisse Flerida A Pasaje; Joao P Pisco; Josefine Striepen; Madeline R Luth; Krittikorn Kumpornsin; Emma F Carpenter; Justin T Munro; Andrew Plater; Avinash S Punekar; Andrew M Shepherd; Sharon M Shepherd; Manu Vanaerschot; James M Murithi; Kelly Rubiano; Aslı Akidil; Sabine Ottilie; Nimisha Mittal; A Hazel Dilmore; Madalyn Won; Rebecca E K Mandt; Kerry McGowen; Edward Owen; Chris Walpole; Manuel Llinás; Marcus C S Lee; Elizabeth A Winzeler; David A Fidock; Ian H Gilbert; Dyann F Wirth; Jacquin C Niles; Beatriz Baragaña; Amanda K Lukens
Journal:  Cell Chem Biol       Date:  2021-08-03       Impact factor: 8.116

  5 in total

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