Literature DB >> 32986829

CMNPD: a comprehensive marine natural products database towards facilitating drug discovery from the ocean.

Chuanyu Lyu1, Tong Chen2, Bo Qiang1, Ningfeng Liu1, Heyu Wang1, Liangren Zhang1, Zhenming Liu1.   

Abstract

Marine organisms are expected to be an important source of inspiration for drug discovery after terrestrial plants and microorganisms. Despite the remarkable progress in the field of marine natural products (MNPs) chemistry, there are only a few open access databases dedicated to MNPs research. To meet the growing demand for mining and sharing for MNPs-related data resources, we developed CMNPD, a comprehensive marine natural products database based on manually curated data. CMNPD currently contains more than 31 000 chemical entities with various physicochemical and pharmacokinetic properties, standardized biological activity data, systematic taxonomy and geographical distribution of source organisms, and detailed literature citations. It is an integrated platform for structure dereplication (assessment of novelty) of (marine) natural products, discovery of lead compounds, data mining of structure-activity relationships and investigation of chemical ecology. Access is available through a user-friendly web interface at https://www.cmnpd.org. We are committed to providing a free data sharing platform for not only professional MNPs researchers but also the broader scientific community to facilitate drug discovery from the ocean.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2021        PMID: 32986829      PMCID: PMC7779072          DOI: 10.1093/nar/gkaa763

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

Review 1.  Prediction of intestinal permeability.

Authors:  William J Egan; Georgio Lauri
Journal:  Adv Drug Deliv Rev       Date:  2002-03-31       Impact factor: 15.470

Review 2.  Marine natural products.

Authors:  John W Blunt; Brent R Copp; Murray H G Munro; Peter T Northcote; Michèle R Prinsep
Journal:  Nat Prod Rep       Date:  2003-02       Impact factor: 13.423

3.  Use of robust classification techniques for the prediction of human cytochrome P450 2D6 inhibition.

Authors:  Roberta G Susnow; Steven L Dixon
Journal:  J Chem Inf Comput Sci       Date:  2003 Jul-Aug

4.  The Cellosaurus, a Cell-Line Knowledge Resource.

Authors:  Amos Bairoch
Journal:  J Biomol Tech       Date:  2018-05-10

Review 5.  Natural products discovery needs improved taxonomic and geographic information.

Authors:  Miguel C Leal; Ana Hilário; Murray H G Munro; John W Blunt; Ricardo Calado
Journal:  Nat Prod Rep       Date:  2016-06-02       Impact factor: 13.423

6.  Natural Products as Sources of New Drugs over the Nearly Four Decades from 01/1981 to 09/2019.

Authors:  David J Newman; Gordon M Cragg
Journal:  J Nat Prod       Date:  2020-03-12       Impact factor: 4.050

Review 7.  NCBI Taxonomy: a comprehensive update on curation, resources and tools.

Authors:  Conrad L Schoch; Stacy Ciufo; Mikhail Domrachev; Carol L Hotton; Sivakumar Kannan; Rogneda Khovanskaya; Detlef Leipe; Richard Mcveigh; Kathleen O'Neill; Barbara Robbertse; Shobha Sharma; Vladimir Soussov; John P Sullivan; Lu Sun; Seán Turner; Ilene Karsch-Mizrachi
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

8.  PubChem3D: a new resource for scientists.

Authors:  Evan E Bolton; Jie Chen; Sunghwan Kim; Lianyi Han; Siqian He; Wenyao Shi; Vahan Simonyan; Yan Sun; Paul A Thiessen; Jiyao Wang; Bo Yu; Jian Zhang; Stephen H Bryant
Journal:  J Cheminform       Date:  2011-09-20       Impact factor: 5.514

9.  PubChem BioAssay: 2017 update.

Authors:  Yanli Wang; Stephen H Bryant; Tiejun Cheng; Jiyao Wang; Asta Gindulyte; Benjamin A Shoemaker; Paul A Thiessen; Siqian He; Jian Zhang
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

10.  PubChem 2019 update: improved access to chemical data.

Authors:  Sunghwan Kim; Jie Chen; Tiejun Cheng; Asta Gindulyte; Jia He; Siqian He; Qingliang Li; Benjamin A Shoemaker; Paul A Thiessen; Bo Yu; Leonid Zaslavsky; Jian Zhang; Evan E Bolton
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

View more
  22 in total

1.  Computational exploration of maternal embryonic leucine zipper kinase (MELK) as a cancer drug target.

Authors:  Nahlah Makki Almansour
Journal:  Saudi J Biol Sci       Date:  2022-06-01       Impact factor: 4.052

2.  Ancient plant-like terpene biosynthesis in corals.

Authors:  Immo Burkhardt; Tristan de Rond; Percival Yang-Ting Chen; Bradley S Moore
Journal:  Nat Chem Biol       Date:  2022-05-23       Impact factor: 16.174

3.  Investigating the structure-activity relationship of marine polycyclic batzelladine alkaloids as promising inhibitors for SARS-CoV-2 main protease (Mpro).

Authors:  Alaa M Elgohary; Abdo A Elfiky; Florbela Pereira; Tarek Mohamed Abd El-Aziz; Mansour Sobeh; Reem K Arafa; Amr El-Demerdash
Journal:  Comput Biol Med       Date:  2022-06-17       Impact factor: 6.698

Review 4.  Recent Advances in the Heterologous Expression of Biosynthetic Gene Clusters for Marine Natural Products.

Authors:  Yushan Xu; Xinhua Du; Xionghui Yu; Qian Jiang; Kaiwen Zheng; Jinzhong Xu; Pinmei Wang
Journal:  Mar Drugs       Date:  2022-05-24       Impact factor: 6.085

5.  Target Prediction Model for Natural Products Using Transfer Learning.

Authors:  Bo Qiang; Junyong Lai; Hongwei Jin; Liangren Zhang; Zhenming Liu
Journal:  Int J Mol Sci       Date:  2021-04-28       Impact factor: 5.923

6.  Abrogation of SARS-CoV-2 interaction with host (NRP1) neuropilin-1 receptor through high-affinity marine natural compounds to curtail the infectivity: A structural-dynamics data.

Authors:  Fahad Humayun; Abbas Khan; Sajjad Ahmad; Wang Yuchen; Guoshen Wei; N Nizam-Uddin; Zahid Hussain; Wajid Khan; Nasib Zaman; Muhammad Rizwan; Muhammad Waseem; Dong-Qing Wei
Journal:  Comput Biol Med       Date:  2021-07-31       Impact factor: 6.698

7.  NPCDR: natural product-based drug combination and its disease-specific molecular regulation.

Authors:  Xueni Sun; Yintao Zhang; Ying Zhou; Xichen Lian; Lili Yan; Ting Pan; Ting Jin; Han Xie; Zimao Liang; Wenqi Qiu; Jianxin Wang; Zhaorong Li; Feng Zhu; Xinbing Sui
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

Review 8.  The Combination of Tradition and Future: Data-Driven Natural-Product-Based Treatments for Parkinson's Disease.

Authors:  Zhijun Miao; Jinwei Bai; Li Shen; Rajeev K Singla
Journal:  Evid Based Complement Alternat Med       Date:  2021-07-14       Impact factor: 2.629

9.  Hemimycalins C-E; Cytotoxic and Antimicrobial Alkaloids with Hydantoin and 2-Iminoimidazolidin-4-one Backbones from the Red Sea Marine Sponge Hemimycale sp.

Authors:  Lamiaa A Shaala; Diaa T A Youssef
Journal:  Mar Drugs       Date:  2021-12-02       Impact factor: 5.118

Review 10.  Advances in Biosynthesis of Natural Products from Marine Microorganisms.

Authors:  Quan Zhou; Kinya Hotta; Yaming Deng; Rui Yuan; Shu Quan; Xi Chen
Journal:  Microorganisms       Date:  2021-12-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.