Literature DB >> 32980441

Target identification and validation of natural products with label-free methodology: A critical review from 2005 to 2020.

Lingyun Dai1, Zhijie Li2, Dan Chen3, Lin Jia4, Jinan Guo5, Tianyun Zhao3, Pär Nordlund6.   

Abstract

Natural products (NPs) have been an important source of therapeutic drugs in clinic use and contributed many chemical probes for research. The usefulness of NPs is however often marred by the incomplete understanding of their direct cellular targets. A number of experimental methods for drug target identification have been developed over the years. One class of methods, termed "label-free" methodology, exploits the energetic and biophysical features accompanying the association of macromolecules with drugs and other compounds in their native forms. Herein we review the working principles, assay implementations, and key applications of the most important approaches, and also give examples where they have been applied to NPs. We also assess the key advantages and limitations of each method. Furthermore, we address when and how the label-free methodology can be particularly useful considering some of the unique features of NP chemistry and bioactivation.
Copyright © 2020. Published by Elsevier Inc.

Keywords:  Label-free methodology; Mechanism of action; Natural product; Target identification; Target validation

Year:  2020        PMID: 32980441     DOI: 10.1016/j.pharmthera.2020.107690

Source DB:  PubMed          Journal:  Pharmacol Ther        ISSN: 0163-7258            Impact factor:   12.310


  5 in total

1.  Induction of Genes Implicated in Stress Response and Autophagy by a Novel Quinolin-8-yl-nicotinamide QN523 in Pancreatic Cancer.

Authors:  Yuting Kuang; Na Ye; Armita Kyani; Mats Ljungman; Michelle Paulsen; Haijun Chen; Mingxiang Zhou; Christopher Wild; Haiying Chen; Jia Zhou; Nouri Neamati
Journal:  J Med Chem       Date:  2022-04-19       Impact factor: 8.039

Review 2.  From Phenotypic Hit to Chemical Probe: Chemical Biology Approaches to Elucidate Small Molecule Action in Complex Biological Systems.

Authors:  Quentin T L Pasquer; Ioannis A Tsakoumagkos; Sascha Hoogendoorn
Journal:  Molecules       Date:  2020-12-03       Impact factor: 4.411

3.  Callyspongiolide kills cells by inducing mitochondrial dysfunction via cellular iron depletion.

Authors:  Jaeyoung Ha; Seung Bum Park
Journal:  Commun Biol       Date:  2021-09-23

4.  Target Characterization of Kaempferol against Myocardial Infarction Using Novel In Silico Docking and DARTS Prediction Strategy.

Authors:  Xunxun Wu; Xiaokun Li; Chunxue Yang; Yong Diao
Journal:  Int J Mol Sci       Date:  2021-11-29       Impact factor: 5.923

Review 5.  An update of label-free protein target identification methods for natural active products.

Authors:  Zhao Cui; Caifeng Li; Peng Chen; Hongjun Yang
Journal:  Theranostics       Date:  2022-01-24       Impact factor: 11.556

  5 in total

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