| Literature DB >> 32977535 |
Kaja Blagotinšek Cokan1, Maša Mavri1, Catrin Sian Rutland2, Sanja Glišić3, Milan Senćanski3, Milka Vrecl1, Valentina Kubale1.
Abstract
The type 2 dopamine receptor D2 (D2-R), member of the G protein-coupled receptor (GPCR) superfamily, exists in two isoforms, short (D2S-R) and long (D2L-R). They differ by an additional 29 amino acids (AA) in the third cytoplasmic loop (ICL3) of the D2L-R. These isoforms differ in their intracellular localization and trafficking functionality, as D2L-R possesses a larger intracellular pool, mostly in the endoplasmic reticulum (ER). This review focuses on the evolutionarily conserved motifs in the ICL3 of the D2-R and proteins interacting with the ICL3 of both isoforms, specifically with the 29 AA insert. These motifs might be involved in D2-R exit from the ER and have an impact on cell-surface and intracellular localization and, therefore, also play a role in the function of dopamine receptor signaling, ligand binding and possible homo/heterodimerization. Our recent bioinformatic data on potential new interaction partners for the ICL3 of D2-Rs are also presented. Both are highly relevant, and have clinical impacts on the pathophysiology of several diseases such as Parkinson's disease, schizophrenia, Tourette's syndrome, Huntington's disease, manic depression, and others, as they are connected to a variety of essential motifs and differences in communication with interaction partners.Entities:
Keywords: D2 dopamine receptor; ICL3; endoplasmic reticulum; interacting partners; intracellular trafficking; retention motifs
Mesh:
Substances:
Year: 2020 PMID: 32977535 PMCID: PMC7598153 DOI: 10.3390/biom10101355
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Figure 1Motif and interaction partners’ differences between D2L-R and D2S-R. CaM—Ca2+-binding protein calmodulin; CGAT—Chromaffin granule amine transporter; DAT—dopamine transporter; FABP3-Fatty acid binding protein 3; FLN-A—filamin A; NMDA (NR2B)—NR2B subunit of the NMDA glutamate (N-methyl-D-aspartate); NSF—N-ethylmaleimide-sensitive factor; Par-4—Prostate apoptosis response-4; PM-plasma membrane; PREB—prolactin regulatory element-binding protein; Rabex-5-Rabaptin-5 interacting protein; TRAPPC9—Trafficking protein particle complex subunit 9.
Motifs obtained from eukaryotic linear motif (ELM) bioinformatics analysis of type 2 dopamine receptor D2 (D2-R) sequences.
| ELM Name | Instances | AA | ELM Description | Cell Compartment | Pattern | Probability |
|---|---|---|---|---|---|---|
| TRG_ER_diArg_1 | RRRR | 217–220 | The di-Arg ER retention motif is defined by two consecutive RR residues or with a single residue insertion (RXR). The motif is completed by an adjacent hydrophobic/arginine residue, which may be on either side of the R pair. | ER membrane, | ([LIVMFYWPR]R[^YFWDE]{0,1}R)|(R[^YFWDE]{0,1}R[LIVMFYWPR]) | 5.37 |
| CLV_NRD_NRD_1 | RRK | 219–221 | N-Arg dibasic convertase (NRD/Nardilysin) cleavage site (X-|-R-K or R-|-R-X). | extracellular, | (.RK)|(RR[^KR]) | 7.47 |
| CLV_PCSK_FUR_1 | RRRK | 217–221 | Furin (PACE) cleavage site (R-X-[RK]-R-|-X). | extracellular, | R.[RK]R. | 50.09 |
| CLV_PCSK_KEX2_1 | KRR | 149–151 | Yeast kexin 2 cleavage site (K-R-|-X or R-R-|-X). | extracellular, | [KR]R. | 7.97 |
| CLV_PCSK_PC1ET2_1 | KRR | 149–151 | NEC1/NEC2 cleavage site (K-R-|-X). | extracellular, | KR. | 3.90 |
| CLV_PCSK_PC7_1 | RYSSKRR | 145–151 | Proprotein convertase 7 (PC7, PCSK7) cleavage site (R-X-X-X-[RK]-R-|-X). | extracellular, | R...[KR]R. | 50.09 |
| CLV_PCSK_SKI1_1 | KIAKI | 336–340 | Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). | ER lumen, | [RK].[AILMFV][LTKF]. | 6.82 |
| LIG_deltaCOP1_diTrp_1 | EWKF | 99–105 | Tryptophan-based motifs enable targeting of the tethering and (dis)assembly factors to the C-terminal mu homology domain (MHD) of the coatomer subunit delta, delta-COP. | ER membrane | [DE]{1,3}.{0,2}W.{1,6}[WF] | 50.10 |
| LIG_LIR_Gen_1 | EWKFSRI | 99–105 | Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. | cytosol, cytoplasmic side of late endosome membrane | [EDST].{0,2}[WFY][^RKPG][^PG][ILV] | 3.06 |
| LIG_LIR_Nem_3 | EWKFSRI | 99–105 | Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. | cytosol, cytoplasmic side of late endosome membrane | [EDST].{0,2}[WFY]..[ILVFY] | 6.36 |
| MOD_N-GLC_1 | EWKFSRI | 99–105 | Generic motif for N-glycosylation. It was shown that Trp, Asp, and Glu are uncommon before the Ser/Thr position. Efficient glycosylation usually occurs when ~60 residues or more separate the glycosylation acceptor site from the C-terminus. | extracellular, GA, ER | [EDST].{0,2}[WFY]..[ILVFY] | 5.02 |
| MOD_N-GLC_2 | NEC | 180–182 | Atypical motif for N-glycosylation site. Examples are Human CD69, which is uniquely glycosylated at typical (Asn-X-Ser/Thr) and atypical (Asn-X-Cys) motifs, beta protein C. | extracellular, GA, ER | (N)[^P]C | 29.7 |
| TRG_ENDOCYTIC_2 | YTAV | 133–136 | Tyrosine-based sorting signal responsible for the interaction with mu subunit of AP (Adaptor Protein) complex. | PM, | Y.[LMVIF] | 2.59 |
Legend: GA—Golgi apparatus; ER—endoplasmic reticulum; PM—plasma membrane.
The bioinformatics approach-informational spectrum method (ISM) analysis of interaction partners of the third cytoplasmic loop (ICL3) of the D2-R. A lower signal to noise S/N ratio suggests a lower interaction affinity between tested protein partners.
| Interaction Partner | S/N Ratio | Function | Reference |
|---|---|---|---|
| Glutamate, NMDA (NR2B) | 62.39 | ionotropic glutamate receptor | Liu, X.Y. et al. (2006) [ |
| Par-4 | 48.63 | regulatory component in dopamine signaling | Guo, Q. et al. (1998) [ |
| Protein 4.1N | 38.61 | membrane-cytoskeleton adaptor | Binda, A.V. et al. (2002) [ |
| FLN-A | 26.65 | actin binding protein | Lin, R. et al. (2001) [ |
| DAT | 20.29 | facilitating reuptake of extracellular dopamine back in the cytosol | Lee, F.J. et al. (2007) [ |
| Gα i/z/o | 17.85 | binding GPCRs | |
| CaM | 13.36 | intermediate calcium-binding messenger | Navarro, G. et al. (2009) [ |
| NSF | 13.03 | ATPase | Hanson, P.I. et. al. (1995) [ |
| Spinophilin | 12.14 | F-actin and protein phosphatase-1-binding protein | Smith, F.D. et al. (1999) [ |
|
| 12.14 | ||
| CGAT | 19.90 | involved in the transport of biogenic monoamines | |
| TRAPPC9 | 19.73 | involved in vesicular trafficking from ER to GA | |
| PREB | 18.78 | transcriptional regulator |
Legend: Glutamate, NMDA (NR2B)—NR2B subunit of the NMDA glutamate receptor (N-methyl-D-aspartate); FLN-A—filamin-A; Par-4—prostate apoptosis response-4; DAT—dopamine transporter; CGAT—chromaffin granule amine transporter; TRAPPC9—trafficking protein particle complex subunit 9; PREB—prolactin regulatory element-binding protein; NSF—N-ethylmaleimide-sensitive factor; CaM—Ca2+-binding protein calmodulin.
A summary of mutations within the ICL3 of the D2-R (source: G protein-coupled receptor (GPCR) database (GPCRdb); http://gpcrdb.org/mutations/render).
| Receptor | AA Residue | Location | Mutation | Reference |
|---|---|---|---|---|
| drd2_human | 249 | ICL3 | D => V | Guiramand, J. et al. (1995) [ |
| drd2_human | 264 | ICL3 | P => G | Guiramand, J. et al. (1995) [ |
| drd2_human | 310 | ICL3 | P => S | Kaiser, R. et al. (2003) [ |
| drd2_human | 311 | ICL3 | S => C | Kaiser, R. et al. (2003) [ |
| drd2_human | 311 | ICL3 | S => C | Goldman D et al. (1997) [ |
| drd2_mouse | 251 | ICL3 | K => V | Guiramand, J. et al. (1995) [ |
| drd2_mouse | 271 | ICL3 | D => V | Guiramand, J. et al. (1995) [ |
| drd2_rat | 233 | ICL3 | R => G | Senogles, SE. et al. (2004) [ |
| drd2_rat | 234 | ICL3 | A => T | Senogles, SE. et al. (2004) [ |