Literature DB >> 32968484

Rational use of SARS-CoV-2 polymerase chain reaction tests within institutions caring for the vulnerable.

Tom A Yates1, Graham S Cooke1, Peter MacPherson2,3,4.   

Abstract

Institutions such as hospitals and nursing or long-stay residential homes accommodate individuals at considerable risk of mortality should they acquire SARS-CoV-2 infection. In these settings, polymerase chain reaction tests play a central role in infection prevention and control. Here, we argue that both false negative and false positive tests are possible and that careful consideration of the prior probability of infection and of test characteristics are needed to prevent harm. We outline evidence suggesting that regular systematic testing of asymptomatic and pre-symptomatic individuals could play an important role in reducing transmission of SARS-CoV-2 within institutions. We discuss how such a programme might be organised, arguing that frequent testing and rapid reporting of results are particularly important. We highlight studies demonstrating that polymerase chain reaction testing of pooled samples can be undertaken with acceptable loss of sensitivity, and advocate such an approach where test capacity is limited. We provide an approach to calculating the most efficient pool size. Given the current limitations of tests for SARS-CoV-2 infection, physical distancing and meticulous infection prevention and control will remain essential in institutions caring for vulnerable people. Copyright:
© 2020 Yates TA et al.

Entities:  

Keywords:  COVID-19; Clinical Diagnostics; Epidemiology; Infection Prevention and Control; SARS Coronavirus 2

Mesh:

Year:  2020        PMID: 32968484      PMCID: PMC7489272          DOI: 10.12688/f1000research.24872.1

Source DB:  PubMed          Journal:  F1000Res        ISSN: 2046-1402


  24 in total

1.  Temporal dynamics in viral shedding and transmissibility of COVID-19.

Authors:  Xi He; Eric H Y Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung
Journal:  Nat Med       Date:  2020-04-15       Impact factor: 53.440

2.  Evaluation of COVID-19 RT-qPCR Test in Multi sample Pools.

Authors:  Idan Yelin; Noga Aharony; Einat Shaer Tamar; Amir Argoetti; Esther Messer; Dina Berenbaum; Einat Shafran; Areen Kuzli; Nagham Gandali; Omer Shkedi; Tamar Hashimshony; Yael Mandel-Gutfreund; Michael Halberthal; Yuval Geffen; Moran Szwarcwort-Cohen; Roy Kishony
Journal:  Clin Infect Dis       Date:  2020-11-19       Impact factor: 9.079

3.  Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus-Infected Pneumonia in Wuhan, China.

Authors:  Dawei Wang; Bo Hu; Chang Hu; Fangfang Zhu; Xing Liu; Jing Zhang; Binbin Wang; Hui Xiang; Zhenshun Cheng; Yong Xiong; Yan Zhao; Yirong Li; Xinghuan Wang; Zhiyong Peng
Journal:  JAMA       Date:  2020-03-17       Impact factor: 56.272

Review 4.  Variation in False-Negative Rate of Reverse Transcriptase Polymerase Chain Reaction-Based SARS-CoV-2 Tests by Time Since Exposure.

Authors:  Lauren M Kucirka; Stephen A Lauer; Oliver Laeyendecker; Denali Boon; Justin Lessler
Journal:  Ann Intern Med       Date:  2020-05-13       Impact factor: 25.391

5.  Presymptomatic SARS-CoV-2 Infections and Transmission in a Skilled Nursing Facility.

Authors:  Melissa M Arons; Kelly M Hatfield; Sujan C Reddy; Anne Kimball; Allison James; Jesica R Jacobs; Joanne Taylor; Kevin Spicer; Ana C Bardossy; Lisa P Oakley; Sukarma Tanwar; Jonathan W Dyal; Josh Harney; Zeshan Chisty; Jeneita M Bell; Mark Methner; Prabasaj Paul; Christina M Carlson; Heather P McLaughlin; Natalie Thornburg; Suxiang Tong; Azaibi Tamin; Ying Tao; Anna Uehara; Jennifer Harcourt; Shauna Clark; Claire Brostrom-Smith; Libby C Page; Meagan Kay; James Lewis; Patty Montgomery; Nimalie D Stone; Thomas A Clark; Margaret A Honein; Jeffrey S Duchin; John A Jernigan
Journal:  N Engl J Med       Date:  2020-04-24       Impact factor: 91.245

6.  Universal Screening for SARS-CoV-2 in Women Admitted for Delivery.

Authors:  Desmond Sutton; Karin Fuchs; Mary D'Alton; Dena Goffman
Journal:  N Engl J Med       Date:  2020-04-13       Impact factor: 91.245

7.  Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing.

Authors:  Luca Ferretti; Chris Wymant; David Bonsall; Christophe Fraser; Michelle Kendall; Lele Zhao; Anel Nurtay; Lucie Abeler-Dörner; Michael Parker
Journal:  Science       Date:  2020-03-31       Impact factor: 47.728

8.  Estimating the generation interval for coronavirus disease (COVID-19) based on symptom onset data, March 2020.

Authors:  Tapiwa Ganyani; Cécile Kremer; Dongxuan Chen; Andrea Torneri; Christel Faes; Jacco Wallinga; Niel Hens
Journal:  Euro Surveill       Date:  2020-04

9.  Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study.

Authors:  Katie Jeffery; Timothy M Walker; David W Eyre; Sheila F Lumley; Denise O'Donnell; Mark Campbell; Elizabeth Sims; Elaine Lawson; Fiona Warren; Tim James; Stuart Cox; Alison Howarth; George Doherty; Stephanie B Hatch; James Kavanagh; Kevin K Chau; Philip W Fowler; Jeremy Swann; Denis Volk; Fan Yang-Turner; Nicole Stoesser; Philippa C Matthews; Maria Dudareva; Timothy Davies; Robert H Shaw; Leon Peto; Louise O Downs; Alexander Vogt; Ali Amini; Bernadette C Young; Philip George Drennan; Alexander J Mentzer; Donal T Skelly; Fredrik Karpe; Matt J Neville; Monique Andersson; Andrew J Brent; Nicola Jones; Lucas Martins Ferreira; Thomas Christott; Brian D Marsden; Sarah Hoosdally; Richard Cornall; Derrick W Crook; David I Stuart; Gavin Screaton; Timothy Ea Peto; Bruno Holthof; Anne-Marie O'Donnell; Daniel Ebner; Christopher P Conlon
Journal:  Elife       Date:  2020-08-21       Impact factor: 8.713

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  4 in total

1.  When might host heterogeneity drive the evolution of asymptomatic, pandemic coronaviruses?

Authors:  Kenichi W Okamoto; Virakbott Ong; Robert Wallace; Rodrick Wallace; Luis Fernando Chaves
Journal:  Nonlinear Dyn       Date:  2022-06-20       Impact factor: 5.741

2.  Detection of Microbial Agents in Oropharyngeal and Nasopharyngeal Samples of SARS-CoV-2 Patients.

Authors:  Tyler Seckar; Xiang Lin; Dipayan Bose; Zhi Wei; Joseph Rohrbaugh; Ronald G Collman; Erle S Robertson
Journal:  Front Microbiol       Date:  2021-03-09       Impact factor: 5.640

3.  Creation and Operation of a COVID-19 Pooled Testing Collection Site Prior to a CTC Rotation.

Authors:  Savannah Smith; Jessica Heffner; Rachael King; Haley Guzman
Journal:  Mil Med       Date:  2021-12-13       Impact factor: 1.563

Review 4.  Nursing homes during the COVID-19 pandemic: a scoping review of challenges and responses.

Authors:  Shamik Giri; Lee Minn Chenn; Roman Romero-Ortuno
Journal:  Eur Geriatr Med       Date:  2021-06-16       Impact factor: 1.710

  4 in total

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