Literature DB >> 32964553

Chemical Proteomics for Expanding the Druggability of Human Disease.

Xiaoyu Zhang1.   

Abstract

Over the past decade, chemical proteomics has emerged as a powerful technique to understand small molecule and protein function in the physiological system and plays a key role in unravelling the cellular targets of pharmacological modulators. Chemical proteomics that integrates activity-based protein profiling (ABPP) with mass spectrometry has been introduced to evaluate small-molecule and protein interaction and expand the druggable proteome. A much larger fraction of the human proteome can now be targeted by small molecules than estimated by past predictions of protein druggability.
© 2020 Wiley-VCH GmbH.

Entities:  

Keywords:  activity-based protein profiling; chemical proteomics; druggability

Mesh:

Substances:

Year:  2020        PMID: 32964553      PMCID: PMC7771211          DOI: 10.1002/cbic.202000495

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  10 in total

Review 1.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

Authors:  Benjamin F Cravatt; Aaron T Wright; John W Kozarich
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 2.  Advances of small molecule targeting of kinases.

Authors:  Norbert Berndt; Rezaul M Karim; Ernst Schönbrunn
Journal:  Curr Opin Chem Biol       Date:  2017-07-18       Impact factor: 8.822

Review 3.  Chemoproteomics and Chemical Probes for Target Discovery.

Authors:  Gerard Drewes; Stefan Knapp
Journal:  Trends Biotechnol       Date:  2018-07-13       Impact factor: 19.536

Review 4.  Human genome sequencing in health and disease.

Authors:  Claudia Gonzaga-Jauregui; James R Lupski; Richard A Gibbs
Journal:  Annu Rev Med       Date:  2012       Impact factor: 13.739

5.  Global profiling of lysine reactivity and ligandability in the human proteome.

Authors:  Stephan M Hacker; Keriann M Backus; Michael R Lazear; Stefano Forli; Bruno E Correia; Benjamin F Cravatt
Journal:  Nat Chem       Date:  2017-07-31       Impact factor: 24.427

6.  Ligand and Target Discovery by Fragment-Based Screening in Human Cells.

Authors:  Christopher G Parker; Andrea Galmozzi; Yujia Wang; Bruno E Correia; Kenji Sasaki; Christopher M Joslyn; Arthur S Kim; Cullen L Cavallaro; R Michael Lawrence; Stephen R Johnson; Iñigo Narvaiza; Enrique Saez; Benjamin F Cravatt
Journal:  Cell       Date:  2017-01-19       Impact factor: 41.582

7.  An Activity-Guided Map of Electrophile-Cysteine Interactions in Primary Human T Cells.

Authors:  Ekaterina V Vinogradova; Xiaoyu Zhang; David Remillard; Daniel C Lazar; Radu M Suciu; Yujia Wang; Giulia Bianco; Yu Yamashita; Vincent M Crowley; Michael A Schafroth; Minoru Yokoyama; David B Konrad; Kenneth M Lum; Gabriel M Simon; Esther K Kemper; Michael R Lazear; Sifei Yin; Megan M Blewett; Melissa M Dix; Nhan Nguyen; Maxim N Shokhirev; Emily N Chin; Luke L Lairson; Bruno Melillo; Stuart L Schreiber; Stefano Forli; John R Teijaro; Benjamin F Cravatt
Journal:  Cell       Date:  2020-07-29       Impact factor: 41.582

8.  Chemical Proteomics Identifies Druggable Vulnerabilities in a Genetically Defined Cancer.

Authors:  Liron Bar-Peled; Esther K Kemper; Radu M Suciu; Ekaterina V Vinogradova; Keriann M Backus; Benjamin D Horning; Thomas A Paul; Taka-Aki Ichu; Robert U Svensson; Jose Olucha; Max W Chang; Bernard P Kok; Zhou Zhu; Nathan T Ihle; Melissa M Dix; Ping Jiang; Matthew M Hayward; Enrique Saez; Reuben J Shaw; Benjamin F Cravatt
Journal:  Cell       Date:  2017-09-28       Impact factor: 41.582

9.  Quantitative reactivity profiling predicts functional cysteines in proteomes.

Authors:  Eranthie Weerapana; Chu Wang; Gabriel M Simon; Florian Richter; Sagar Khare; Myles B D Dillon; Daniel A Bachovchin; Kerri Mowen; David Baker; Benjamin F Cravatt
Journal:  Nature       Date:  2010-11-17       Impact factor: 49.962

10.  Proteome-wide covalent ligand discovery in native biological systems.

Authors:  Keriann M Backus; Bruno E Correia; Kenneth M Lum; Stefano Forli; Benjamin D Horning; Gonzalo E González-Páez; Sandip Chatterjee; Bryan R Lanning; John R Teijaro; Arthur J Olson; Dennis W Wolan; Benjamin F Cravatt
Journal:  Nature       Date:  2016-06-15       Impact factor: 49.962

  10 in total
  1 in total

1.  Chemical proteomic identification of functional cysteines with atypical electrophile reactivities.

Authors:  Kevin Litwin; Vincent M Crowley; Radu M Suciu; Dale L Boger; Benjamin F Cravatt
Journal:  Tetrahedron Lett       Date:  2021-02-04       Impact factor: 2.415

  1 in total

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