| Literature DB >> 32963574 |
Haoran Li1, Biao Li1, Yanlin Zheng1.
Abstract
MATERIALS AND METHODS: The components with oral bioavailability ≥30% and drug similarity ≥0.18 were screened by the Traditional Chinese Medicine System Pharmacology Database and Analysis Platform (TCMSP), and the effective grouping of Compound-Xueshuantong Capsule was obtained. At the same time, the targets of each drug active component in the Compound-Xueshuantong Capsule were obtained by searching the TCMSP. The effective components and targets of the Compound-Xueshuantong Capsule were annotated by the UniProt database, and the disease treatment targets were searched by the GeneCards database. The disease treatment target is intersected with the drug target and the Wayne diagram is drawn by VennDiagram. The active ingredient targets of the intersection and Compound-Xueshuantong Capsule were inputted into Cytoscape 3.7.2 software to construct the active ingredient-target-disease interaction network. The above targets were inputted into the String database for protein-protein interaction network prediction. Finally, by using the DAVID database, GO and KEGG enrichment analysis was carried out to reveal the potential signal pathway of the Compound-Xueshuantong Capsule in diabetic retinopathy treatment.Entities:
Year: 2020 PMID: 32963574 PMCID: PMC7499338 DOI: 10.1155/2020/8467046
Source DB: PubMed Journal: Evid Based Complement Alternat Med ISSN: 1741-427X Impact factor: 2.629
Figure 1Active component-target network of Compound-Xueshuantong Capsule in diabetic retinopathy treatment.
The top 10 active components in Compound-Xueshuantong Capsule.
| Traditional Chinese medicine | Component | Degree | Betweenness centrality |
|---|---|---|---|
| HuangQi, SanQi | Quercetin | 160 | 0.17766737 |
| DanShen | Luteolin | 34 | 0.04646771 |
| HuangQi | Kaempferol | 34 | 0.04183024 |
| SanQi, XuanShen | Beta-sitosterol | 24 | 0.00928675 |
| HuangQi | Isorhamnetin | 14 | 0.00976904 |
| DanShen | Tanshinone IIa | 12 | 0.01089857 |
| DanShen | Cryptotanshinone | 10 | 0.00746128 |
| HuangQi | Formononetin | 10 | 0.00126356 |
| DanShen | Dehydrotanshinone II A | 8 | 0.00126356 |
| DanShen | Dan-shexinkum d | 8 | 0.00126356 |
Figure 2Protein-protein interaction (PPI) network of Compound-Xueshuantong Capsule in diabetic retinopathy treatment.
Figure 3Core targets of Compound-Xueshuantong Capsule in diabetic retinopathy treatment.
Figure 4Histogram of GO functional enrichment analysis.
Figure 5Bubble diagram of GO functional enrichment analysis.
Biological process of Compound-Xueshuantong Capsule in diabetic retinopathy treatment.
| ID | Description | Gene ID | Count |
|---|---|---|---|
| GO: 0004879 | Nuclear receptor activity | PGR/ESR1/AR/PPARG/NR3C1/RXRB/AHR | 7 |
| GO: 0098531 | Transcription factor activity, direct ligand regulated sequence-specific DNA binding | PGR/ESR1/AR/PPARG/NR3C1/RXRB/AHR | 7 |
| GO: 0003707 | Steroid hormone receptor activity | PGR/NR3C2/ESR1/AR/PPARG/NR3C1/RXRB | 7 |
| GO: 0001228 | Transcription activator activity, RNA polymerase II-specific | PGR/ESR1/AR/RELA/NR3C1/FOS/RXRB/HIF1A/NFE2L2/PARP1/IRF1 | 11 |
| GO: 0097153 | Cysteine-type endopeptidase activity involved in apoptotic process | CASP9/CASP3/CASP7/CASP1 | 4 |
| GO: 0005496 | Steroid binding | PGR/NR3C2/ESR1/AR/NR3C1/CAV1 | 6 |
| GO: 0001085 | RNA polymerase II transcription factor binding | ESR1/AR/PPARG/FOS/AHR/NFE2L2 | 6 |
| GO: 0030331 | Estrogen receptor binding | ESR1/PPARG/PCNA/PARP1 | 4 |
| GO: 0001221 | Transcription cofactor binding | ESR1/RELA/AHR/NFE2L2 | 4 |
| GO: 0042826 | Histone deacetylase binding | RELA/CCND1/MAPK8/HIF1A/PARP1 | 5 |
| GO: 0001091 | RNA polymerase II basal transcription factor binding | ESR1/AR/AHR | 3 |
| GO: 0001223 | Transcription coactivator binding | ESR1/RELA/AHR | 3 |
| GO: 0005178 | Integrin binding | EGFR/ICAM1/VCAM1/PRKCA/IGF2 | 5 |
| GO: 0035257 | Nuclear hormone receptor binding | ESR1/PPARG/PCNA/HIF1A/PARP1 | 5 |
| GO: 0051117 | ATPase binding | PGR/ESR1/AR/CAV1 | 4 |
| GO: 0033613 | Activating transcription factor binding | PPARG/RELA/FOS/NFE2L2 | 4 |
| GO: 0035258 | Steroid hormone receptor binding | ESR1/PPARG/PCNA/PARP1 | 4 |
| GO: 0016504 | Peptidase activator activity | APP/CAV1/CASP1 | 3 |
| GO: 0051427 | Hormone receptor binding | ESR1/PPARG/PCNA/HIF1A/PARP1 | 5 |
| GO: 0042562 | Hormone binding | ACHE/AR/EGFR/NR3C1 | 4 |
Figure 6Histogram of enrichment analysis of the KEGG pathway.
Figure 7Bubble diagram of KEGG pathway enrichment analysis.
Target enrichment pathway of Compound-Xueshuantong Capsule in diabetic retinopathy treatment.
| ID | Description | Gene ID | Count |
|---|---|---|---|
| hsa04933 | AGE-RAGE signaling pathway in diabetic complications | RELA/VEGFA/CCND1/IL6/CASP3/ICAM1/BCL2/MAPK8/SELE/VCAM1/PRKCA/NOS3 | 12 |
| hsa05418 | Fluid shear stress and atherosclerosis | RELA/VEGFA/ICAM1/GSTP1/BCL2/FOS/MAPK8/SELE/VCAM1/GSTM1/CAV1/NOS3/NFE2L2 | 13 |
| hsa04210 | Apoptosis | RELA/CASP9/CASP3/CASP7/MCL1/BIRC5/BCL2/FOS/MAPK8/RAF1/PARP1/CTSD | 12 |
| hsa04668 | TNF signaling pathway | RELA/IL6/CASP3/CASP7/ICAM1/FOS/MAPK8/SELE/VCAM1/IRF1 | 10 |
| hsa05210 | Colorectal cancer | EGFR/CCND1/CASP9/CASP3/BIRC5/BCL2/FOS/MAPK8/RAF1 | 9 |
| hsa05161 | Hepatitis B | RELA/CASP9/IL6/CASP3/PCNA/BIRC5/BCL2/FOS/MAPK8/RAF1/PRKCA | 11 |
| hsa05215 | Prostate cancer | AR/RELA/EGFR/CCND1/CASP9/GSTP1/BCL2/PLAU/RAF1 | 9 |
| hsa05167 | Kaposi sarcoma-associated herpesvirus infection | RELA/VEGFA/CCND1/CASP9/IL6/CASP3/ICAM1/FOS/MAPK8/RAF1/HIF1A | 11 |
| hsa05133 | Pertussis | RELA/IL6/CASP3/CASP7/FOS/MAPK8/IRF1/CASP1 | 8 |
| hsa04215 | Apoptosis-multiple species | CASP9/CASP3/CASP7/BIRC5/BCL2/MAPK8 | 6 |
| hsa05205 | Proteoglycans in cancer | ESR1/EGFR/VEGFA/CCND1/CASP3/PLAU/RAF1/PRKCA/HIF1A/CAV1/IGF2 | 11 |
| hsa04917 | Prolactin signaling pathway | ESR1/RELA/CCND1/FOS/MAPK8/RAF1/IRF1 | 7 |
| hsa04066 | HIF-1 signaling pathway | RELA/EGFR/VEGFA/IL6/BCL2/PRKCA/HIF1A/NOS3 | 8 |
| hsa05212 | Pancreatic cancer | RELA/EGFR/VEGFA/CCND1/CASP9/MAPK8/RAF1 | 7 |
| hsa05163 | Human cytomegalovirus infection | RELA/EGFR/VEGFA/CCND1/CASP9/IL6/CASP3/RAF1/PRKCA/PTGER3 | 10 |
| hsa04926 | Relaxin signaling pathway | RELA/CASP9/IL6/CASP3/CASP7/CASP1 | 6 |
| hsa05134 | Legionellosis | RELA/CASP9/IL6/CASP3/NFKBIA/CASP7/CASP8/HSF1/CASP1 | 9 |
| hsa04370 | VEGF signaling pathway | VEGFA/CASP9/RAF1/PRKCA/NOS3/HSPB1 | 6 |
| hsa04151 | PI3K-Akt signaling pathway | RELA/EGFR/VEGFA/CCND1/CASP9/IL6/MCL1/BCL2/RAF1/PRKCA/NOS3/IGF2 | 12 |
| hsa04915 | Estrogen signaling pathway | PGR/ESR1/EGFR/BCL2/FOS/RAF1/NOS3/CTSD | 8 |