| Literature DB >> 32963228 |
Fei Yu1, Rong Xiang1, Xiaoqian Deng1, Lili Wang2, Zhengsen Yu1, Shijun Tian1, Ruiying Liang1, Yanbai Li1, Tianlei Ying3, Shibo Jiang4.
Abstract
The outbreaks of severe acute respiratory syndrome (SARS) and Coronavirus Disease 2019 (COVID-19) caused by SARS-CoV and SARS-CoV-2, respectively, have posed severe threats to global public health and the economy. Treatment and prevention of these viral diseases call for the research and development of human neutralizing monoclonal antibodies (NMAbs). Scientists have screened neutralizing antibodies using the virus receptor-binding domain (RBD) as an antigen, indicating that RBD contains multiple conformational neutralizing epitopes, which are the main structural domains for inducing neutralizing antibodies and T-cell immune responses. This review summarizes the structure and function of RBD and RBD-specific NMAbs against SARS-CoV and SARS-CoV-2 currently under development.Entities:
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Year: 2020 PMID: 32963228 PMCID: PMC7506210 DOI: 10.1038/s41392-020-00318-0
Source DB: PubMed Journal: Signal Transduct Target Ther ISSN: 2059-3635
Characteristics of SARS-CoV and SARS-CoV-2
| Characteristics | SARS-CoV | SARS-CoV-2 |
|---|---|---|
| Species | β Coronavirus, beta-CoV, lineage B | β Coronavirus, beta-CoV, lineage B |
| Origin | Bat | Bat |
| Intermediate hosts | Not known | |
| Genetic material | Positive-stranded RNA | Positive-stranded RNA |
| Receptor | Angiotensin-converting enzyme 2 (ACE2) | Angiotensin-converting enzyme 2 (ACE2) |
| Route of transmission | Respiratory droplets, close contact, fecal-oral route (?) | Respiratory droplets, close contact, fecal-oral route (?) |
| Incubation period | 5 (2–10) days ( | 5.2 (1.8–12.4) days[ |
| Clinical symptoms | Fever (99%), Documented elevated temperature (85%), Nonproductive cough (69%), Myalgia (49%), Dyspnea (42%)[ | Fever (83%), Cough (82%), Shortness of breath (31%), Muscle ache (11%), Confusion (9%), Headache (8%), Sore throat (5%), Rhinorrhoea (4%), Chest pain (2%), Diarrhea (2%), Nausea and vomiting (1%)[ |
| Fatality rate | 9.6% | ~3.1%a |
| Epidemic area | Asia, Europe, North, and South America | Globally |
| Epidemic time | ~8 months | Unknown |
| High-risk for severe illness | Young and middle-aged | Elderly or frail with underlying disease |
| Possibility of recurrence | Very unlikely | Very likely |
aCalculated based on the total number of the confirmed cases and deaths as of Sep 19, 2020
Fig. 1Statistical charts of cumulative cases. Statistical charts of cumulative number of SARS cases (a) and COVID-19 cases (b)
Fig. 2Schematic diagram of coronavirus particle and S protein gene partitioning. (a) Major structural proteins of the coronavirus particle include Spike glycoprotein (S protein); Membrane (M) protein; Nucleocapsid (N) protein; and Envelope (E) protein. (b) The S protein is mainly divided into S1 and S2 subunits and subdivided again into signal peptide (SP); N-terminal domain (NTD); receptor-binding domain (RBD), which contains receptor binding motif (RBM); fusion peptide (FP); heptad repeat region 1 (HR1); heptad repeat region 2 (HR2); transmembrane region (TM); and cytoplasmic tail (CP) according to different functions
Fig. 3Schematic diagram of coronavirus life cycle. The virion enters the cell through recognizing specific receptor, uses the host cell resources to carry on genome replication and synthesis of major structural proteins, and then finally assembles into the mature virion which is then released out of cell. The invasion process mainly includes (a) coronavirus S protein recognition and binding to cell receptors, along with virus attachment to the cell; (b) induction of conformational changes in the S protein upon binding, in which the fusion protein is exposed and inserted into the host cell membrane; (c) HR1 and HR2 of the S2 subunit gradually approaching each other, narrowing the distance between viral envelope and host cell membrane; (d, e) HR1 and HR2 forming a six helical bundle (6-HB), which causes the virus envelope and host cell membrane to fuse from the hemifusion state to complete fusion, thus releasing the virus gene into the host. Viral genes replicate and translate within cells to produce genomic RNA and viral proteins, which are assembled with the proteins to form viral particles
Fig. 4Crystal structure of RBD binding to ACE2. (a) RBD (gray) of SARS-CoV specifically binds the receptor ACE2 (dark green) (PDB: 2AJF), and the interface is marked purple; (b) RBD (gray) of SARS-CoV-2 specifically binds the receptor ACE2 (PDB: 6LZG), and the interface is marked hot pink
Fig. 5Pattern of NMAbs action. The major types of neutralizing monoclonal antibodies (NMAbs) include immunoglobulin G (IgG), single-stranded variable region fragments (scFvs), heavy-chain antibody (HcAb) and single-domain antibodies (sdAbs). NMAbs exert antiviral activity by (a) NMAbs functionally mimicking ACE2 to bind RBD and blocking ACE2-RBD binding; (b) NMAbs binding RBD without functionally mimicking ACE2 but blocking ACE2-RBD binding; (c) NMAbs binding RBD but without blocking ACE2-RBD binding (interface is marked pink)
Fig. 6Crystal structure of NMAb binding to RBD. (a) 80 R (light green) imitates ACE2 binding to the interface (purple) on RBD of SARS-CoV (PDB: 7BZ5); (b) m396 (orange) binds to RBD of SARS-CoV without functionally mimicking ACE2, preventing RBD from binding to ACE2 (PDB: 2DD8). (c) CB6 (sky blue) functionally mimics ACE2 binding to the interface (hot pink) on RBD of SARS-CoV-2 (PDB: 7C01); (d) S309 (grass green) binds to RBD of SARS-CoV-2 without blocking the binding of RBD to ACE2 (PDB: 6WPS). (e) The SARS-CoV-specific NMAb CR3022 (purple) binds to RBD of SARS-CoV-2 without blocking the binding of RBD of SARS-CoV-2 to ACE2 (PDB: 6W41)
Neutralizing monoclonal antibodies against SARS-CoV
| NMAb’s name | Type | Source | Preparation | Target | Assay and result | Ref. |
|---|---|---|---|---|---|---|
| 80R | sdAb | Human | Nonimmune phage libraries of human antibodies | 324–503 | LV neutralization: IC50 < 7.43 nM; | [ |
| Full protection of mice: 4/4 mice with >4 log reduction in lung viral load at 12.5 mg/kg. | ||||||
| CR3014 | scFv | Human | Semisynthetic antibody phage display libraries | 318–510 | LV neutralization: ND100 at 42 nM; | [ |
| Protection of ferrets: 10 mg/kg. | ||||||
1A5 2C5 | IgG | Mouse | Animal immunization; hybridoma technology | 310–535 | LV neutralization: IC50 = 0.71 µg/ml. | [ |
| LV neutralization: IC50 = 1.27 µg/ml. | ||||||
| S230.15 | IgG | Human | B cell-based EBV transformation | RBD | Full protection of mice: 200 μg/mouse. | [ |
| m396 | IgG1 | Human | Healthy human antibody libraries of volunteers | 482–491 | LV (GD03) neutralization: IC50 = 0.1 µg/ml; | [ |
| LV (Tor2) neutralization: IC50 = 0.01 µg/ml; | ||||||
| Full protection of mice: 200 μg/mouse. | ||||||
| 201 | IgG1 | Human | Transgenic mice; hybridoma technology | 490–510 | LV neutralization: IC50 ∼ 1 nM; | [ |
| Full protection of mice: 40 mg/kg. | ||||||
| chimeric F26G18 | IgG | Chimeric antibody | Animal immunization; hybridoma technology | 460–476 | LV neutralization: titer = 2.07 nM. | [ |
| 341 C | IgG | Mouse | Animal immunization; hybridoma technology | 490–510 | LV neutralization: ND100 at a dilution of 1:1280. | [ |
| VHH-72 | sdAb | llama | Animal immunization and sequencing | RBD | PsV neutralization: IC50 = 0.14 µg/ml. | [ |
| CR3022 | scFv | Human | Semisynthetic antibody phage display libraries | RBD | LV neutralization: IC100 = 23.5 µg/ml. | [ |
| 47D11 | IgG | Chimeric antibody | Transgenic mice; hybridoma technology | RBD | PsV neutralization: IC50 = 0.061 μg/ml; | [ |
| LV neutralization: IC50 = 0.19 μg/ml. | ||||||
| S309 | IgG | human | Peripheral blood of SARS-infected patients | the front end of RBD | PsV neutralization: IC50 = 120 ~ 180 ng/ml. | [ |
| ADI-55689 | IgG | Human | Memory B cell repertoire of a convalescent SARS donor | RBD | PsV neutralization: IC50 = 0.004 ~ 0.06 μg/ml. | [ |
| ADI-55993 | ||||||
| ADI-56000 | ||||||
| ADI-55688 | ||||||
| ADI-56046 | ||||||
| ADI-56010 | ||||||
| ADI-55690 | ||||||
| ADI-55951 |
PsV pseudovirus, LV live virus
Neutralizing monoclonal antibodies against SARS-CoV-2
| NMAbs’s name | Type | Source | Preparation | Target | Assay and result | Ref. |
|---|---|---|---|---|---|---|
| 3F11 | sdAb | Human | Humanized phage display library | RBD | PsV neutralization: IC50 = 3.8 ng/ml; | [ |
| LV neutralization: IC50 = 436 ng/ml. | ||||||
| BD-368-2 | IgG | Human | B cells of convalescent patients; Single cell sequencing | RBD | PsV neutralization: IC50 = 1.2 ng/ml; | [ |
| LV neutralization: IC50 = 15 ng/ml; | ||||||
| Full protection of mice: 20 mg/kg. | ||||||
| ab1 | IgG | Human | Phage displayed Fab, scFv and VH libraries | RBD | Reporter Gene neutralization assay: 200 ng/ml; | [ |
| LV neutralization: ND100 < 400 ng/ml; | ||||||
| Full protection of mice: 0.3 mg of IgG1 ab1. | ||||||
| CB6 | IgG | Human | B cells of convalescent patients | RBD | PsV neutralization: ND50 = 0.036 μg/ml; | [ |
| LV neutralization: ND50 = 0.036 μg/ml; | ||||||
| Protection of rhesus macaques: 50 mg/kg. | ||||||
| B38 | IgG | Human | Peripheral blood of SARS-CoV-2- infected patients | RBD | LV neutralization: IC50 = 0.177 µg/ml; | [ |
| Protection of mice: Lung viral load reduced by 32.8% compared with PBS control. | ||||||
| H4 | IgG | Human | Peripheral blood of SARS-CoV-2- infected patients | RBD | LV neutralization: IC50 = 0.896 µg/ml; | [ |
| Protection of mice: Lung viral load reduced by 26% compared with PBS control. | ||||||
7B11 18F3 | IgG | Mouse | Animal immunization; hybridoma technology | RBD | PsV neutralization: IC80 = 10 μg/ml. | [ |
| PsV neutralization: IC80 = 10 μg/ml. | ||||||
| P2C-1F11 | IgG | Human | Plasma of convalescing patients | RBD | PsV neutralization: IC50 = 0.03 µg/ml. | [ |
| rRBD-15 | IgG | Human | A synthetic human Fab antibody library | RBD | PsV neutralization: IC50 = 12.2 nM. | [ |
| VHH-72-Fc | HCAb | llama | Animal immunization and sequencing | RBD | PsV neutralization: IC50 ~ 0.2 µg/ml. | [ |
311mab–31B5 311mab–32D4 | IgG | Human | B cells of convalescent patients | RBD | PsV neutralization: IC50 = 33.8 ng/ml. | [ |
| PsV neutralization: IC50 = 69.8 ng/ml. | ||||||
| CC12.1 | IgG | Human | B cells of convalescent patients | RBD | PsV neutralization: IC50 = 0.019 μg/ml; | [ |
| LV neutralization: IC50 = 0.022 μg/ml; | ||||||
| Full protection of Syrian hamsters: Antibody serum concentration of ~22 µg/ml. | ||||||
COVA1-18 COVA2-15 | IgG | Human | B cells of convalescent patients | RBD | PsV neutralization: IC50 = 8 ng/ml; | [ |
| LV neutralization: IC50 = 7 ng/ml. | ||||||
| PsV neutralization: IC50 = 8 ng/ml; | ||||||
| LV neutralization: IC50 = 9 ng/ml. | ||||||
| 47D11 | IgG | Chimeric antibody | Transgenic mice; hybridoma technology | RBD | PsV neutralization: IC50 = 0.061 μg/ml; | [ |
| LV neutralization: IC50 = 0.57 μg/ml. | ||||||
| S309 | IgG | human | Peripheral blood of SARS-infected patients | RBD | PsV neutralization: IC50 = 3.5 nM; | [ |
| LV neutralization: IC50 = 79 ng/ml. | ||||||
| ADI-55689 | IgG | Human | Memory B cell repertoire of a convalescent SARS donor | RBD | PsV neutralization: IC50 = 0.05 ~ 1.4 μg/ml; | [ |
| ADI-55993 | LV neutralization: showed neutralizing activity at 100 nM. | |||||
| ADI-56000 | ||||||
| ADI-55688 | ||||||
| ADI-56046 | ||||||
| ADI-56010 | ||||||
| ADI-55690 | ||||||
| ADI-55951 | ||||||
REGN10989 REGN10987 REGN10933 REGN10934 | IgG | Human | Transgenic mice; Peripheral blood of SARS-CoV-2-infected patients; Next Generation Sequencing | RBD | PsV neutralization: IC50 = 7.23 pM; | [ |
| LV neutralization: IC50 = 7.38 pM. | ||||||
| PsV neutralization: IC50 = 40.6 pM; | ||||||
| LV neutralization: IC50 = 42.1 pM. | ||||||
| PsV neutralization: IC50 = 42.8 pM; | ||||||
| LV neutralization: IC50 = 37.4 pM. | ||||||
| PsV neutralization: IC50 = 54.4 pM; | ||||||
| LV neutralization: IC50 = 28.3 pM. | ||||||
H11-H4-Fc H11-D4-Fc | HCAb | llama | Phage display library | RBD | LV neutralization: ND50 = 6 nM. | [ |
| LV neutralization: ND50 = 18 nM. | ||||||
| H014 | IgG | Chimeric antibody | Animal immunization and phage display | RBD | PsV neutralization: IC50 = 3 nM; LV neutralization: IC50 = 38 nM; Protection of mice: Lung viral load reduced by about 10 ~100 folds compared with PBS control. | [ |
COV2-2196 COV2-2130 | IgG | Human | Peripheral blood of convalescent patients | RBD | PsV neutralization: IC50 = 0.7 ng/ml; | [ |
| LV neutralization: IC50 = 15 ng/ml. | ||||||
| PsV neutralization: IC50 = 1.6 ng/ml; | ||||||
| LV neutralization: IC50 = 107 ng/ml. | ||||||
| 2–15 | IgG | Human | Peripheral blood of COVID-19 patients | RBD | PsV neutralization: IC50 = 0.7 ng/ml; | [ |
| LV neutralization: IC50 = 5 ng/ml; | ||||||
| Protection of hamsters: Viral RNA copy numbers and infectious virus titers in lung tissues were reduced by 4 logs or more compared with PBS control. | ||||||
| CR3022 | IgG | Human | Gene cloning; Protein expression | RBD | LV neutralization: IC50 = ~ 0.114 μg/ml. | [ |
| 4A8 | IgG | Human | Peripheral blood of convalescent patients | NTD | PsV neutralization: EC50 = 49 μg/ml; | [ |
| LV neutralization: EC50 = 0.61 μg/ml. |
PsV pseudovirus, LV live virus