Literature DB >> 32960972

Inferring the Effect of Species Interactions on Trait Evolution.

Liang Xu1, Sander Van Doorn1, Hanno Hildenbrandt1, Rampal S Etienne1.   

Abstract

Models of trait evolution form an important part of macroevolutionary biology. The Brownian motion model and Ornstein-Uhlenbeck models have become classic (null) models of character evolution, in which species evolve independently. Recently, models incorporating species interactions have been developed, particularly involving competition where abiotic factors pull species toward an optimal trait value and competitive interactions drive the trait values apart. However, these models assume a fitness function rather than derive it from population dynamics and they do not consider dynamics of the trait variance. Here, we develop a general coherent trait evolution framework where the fitness function is based on a model of population dynamics, and therefore it can, in principle, accommodate any type of species interaction. We illustrate our framework with a model of abundance-dependent competitive interactions against a macroevolutionary background encoded in a phylogenetic tree. We develop an inference tool based on Approximate Bayesian Computation and test it on simulated data (of traits at the tips). We find that inference performs well when the diversity predicted by the parameters equals the number of species in the phylogeny. We then fit the model to empirical data of baleen whale body lengths, using three different summary statistics, and compare it to a model without population dynamics and a model where competition depends on the total metabolic rate of the competitors. We show that the unweighted model performs best for the least informative summary statistic, while the model with competition weighted by the total metabolic rate fits the data slightly better than the other two models for the two more informative summary statistics. Regardless of the summary statistic used, the three models substantially differ in their predictions of the abundance distribution. Therefore, data on abundance distributions will allow us to better distinguish the models from one another, and infer the nature of species interactions. Thus, our framework provides a conceptual approach to reveal species interactions underlying trait evolution and identifies the data needed to do so in practice. [Approximate Bayesian computation; competition; phylogeny; population dynamics; simulations; species interaction; trait evolution.].
© The Author(s) 2020. Published by Oxford University Press, on behalf of the Society of Systematic Biologists.

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Year:  2021        PMID: 32960972      PMCID: PMC8048392          DOI: 10.1093/sysbio/syaa072

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


  30 in total

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Review 2.  An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology.

Authors:  Matthew W Pennell; Luke J Harmon
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3.  The effect of body size on animal abundance.

Authors:  Robert Henry Peters; Karen Wassenberg
Journal:  Oecologia       Date:  1983-10       Impact factor: 3.225

4.  A Unifying Comparative Phylogenetic Framework Including Traits Coevolving Across Interacting Lineages.

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Journal:  Syst Biol       Date:  2017-07-01       Impact factor: 15.683

5.  TRANSLATING BETWEEN MICROEVOLUTIONARY PROCESS AND MACROEVOLUTIONARY PATTERNS: THE CORRELATION STRUCTURE OF INTERSPECIFIC DATA.

Authors:  Thomas F Hansen; Emília P Martins
Journal:  Evolution       Date:  1996-08       Impact factor: 3.694

6.  An Assessment of Phylogenetic Tools for Analyzing the Interplay Between Interspecific Interactions and Phenotypic Evolution.

Authors:  J P Drury; G F Grether; T Garland; H Morlon
Journal:  Syst Biol       Date:  2018-05-01       Impact factor: 15.683

7.  Understanding the effect of competition during evolutionary radiations: an integrated model of phenotypic and species diversification.

Authors:  Leandro Aristide; Hélène Morlon
Journal:  Ecol Lett       Date:  2019-09-10       Impact factor: 9.492

8.  Phylogenetic analysis of trophic associations.

Authors:  A R Ives; H C J Godfray
Journal:  Am Nat       Date:  2006-05-19       Impact factor: 3.926

9.  Independent evolution of baleen whale gigantism linked to Plio-Pleistocene ocean dynamics.

Authors:  Graham J Slater; Jeremy A Goldbogen; Nicholas D Pyenson
Journal:  Proc Biol Sci       Date:  2017-05-31       Impact factor: 5.349

10.  Detecting local diversity-dependence in diversification.

Authors:  Liang Xu; Rampal S Etienne
Journal:  Evolution       Date:  2018-04-24       Impact factor: 3.694

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