Literature DB >> 32958579

Deep Learning to Estimate RECIST in Patients with NSCLC Treated with PD-1 Blockade.

Kathryn C Arbour1,2, Anh Tuan Luu3, Jia Luo1, Justin F Gainor4, Regina Barzilay5, Matthew D Hellmann6,2,7, Hira Rizvi1, Andrew J Plodkowski4, Mustafa Sakhi8, Kevin B Huang8, Subba R Digumarthy9, Michelle S Ginsberg4, Jeffrey Girshman4, Mark G Kris1,2, Gregory J Riely1,2, Adam Yala3.   

Abstract

Real-world evidence (RWE), conclusions derived from analysis of patients not treated in clinical trials, is increasingly recognized as an opportunity for discovery, to reduce disparities, and to contribute to regulatory approval. Maximal value of RWE may be facilitated through machine-learning techniques to integrate and interrogate large and otherwise underutilized datasets. In cancer research, an ongoing challenge for RWE is the lack of reliable, reproducible, scalable assessment of treatment-specific outcomes. We hypothesized a deep-learning model could be trained to use radiology text reports to estimate gold-standard RECIST-defined outcomes. Using text reports from patients with non-small cell lung cancer treated with PD-1 blockade in a training cohort and two test cohorts, we developed a deep-learning model to accurately estimate best overall response and progression-free survival. Our model may be a tool to determine outcomes at scale, enabling analyses of large clinical databases. SIGNIFICANCE: We developed and validated a deep-learning model trained on radiology text reports to estimate gold-standard objective response categories used in clinical trial assessments. This tool may facilitate analysis of large real-world oncology datasets using objective outcome metrics determined more reliably and at greater scale than currently possible.This article is highlighted in the In This Issue feature, p. 1. ©2020 American Association for Cancer Research.

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Year:  2020        PMID: 32958579      PMCID: PMC7981277          DOI: 10.1158/2159-8290.CD-20-0419

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  14 in total

1.  Association of Patient Characteristics and Tumor Genomics With Clinical Outcomes Among Patients With Non-Small Cell Lung Cancer Using a Clinicogenomic Database.

Authors:  Gaurav Singal; Peter G Miller; Vineeta Agarwala; Gerald Li; Gaurav Kaushik; Daniel Backenroth; Anala Gossai; Garrett M Frampton; Aracelis Z Torres; Erik M Lehnert; David Bourque; Claire O'Connell; Bryan Bowser; Thomas Caron; Ezra Baydur; Kathi Seidl-Rathkopf; Ivan Ivanov; Garrett Alpha-Cobb; Ameet Guria; Jie He; Shannon Frank; Allen C Nunnally; Mark Bailey; Ann Jaskiw; Dana Feuchtbaum; Nathan Nussbaum; Amy P Abernethy; Vincent A Miller
Journal:  JAMA       Date:  2019-04-09       Impact factor: 56.272

2.  Characteristics of Real-World Metastatic Non-Small Cell Lung Cancer Patients Treated with Nivolumab and Pembrolizumab During the Year Following Approval.

Authors:  Sean Khozin; Amy P Abernethy; Nathan C Nussbaum; Jizu Zhi; Melissa D Curtis; Melisa Tucker; Shannon E Lee; David E Light; Anala Gossai; Rachael A Sorg; Aracelis Z Torres; Payal Patel; Gideon Michael Blumenthal; Richard Pazdur
Journal:  Oncologist       Date:  2018-01-09

3.  A natural language processing pipeline for pairing measurements uniquely across free-text CT reports.

Authors:  Merlijn Sevenster; Jeffrey Bozeman; Andrea Cowhy; William Trost
Journal:  J Biomed Inform       Date:  2014-09-06       Impact factor: 6.317

4.  Deep Learning to Classify Radiology Free-Text Reports.

Authors:  Matthew C Chen; Robyn L Ball; Lingyao Yang; Nathaniel Moradzadeh; Brian E Chapman; David B Larson; Curtis P Langlotz; Timothy J Amrhein; Matthew P Lungren
Journal:  Radiology       Date:  2017-11-13       Impact factor: 11.105

5.  Pseudoprogression in Previously Treated Patients with Non-Small Cell Lung Cancer Who Received Nivolumab Monotherapy.

Authors:  Daichi Fujimoto; Hiroshige Yoshioka; Yuki Kataoka; Takeshi Morimoto; Tae Hata; Young Hak Kim; Keisuke Tomii; Tadashi Ishida; Masataka Hirabayashi; Satoshi Hara; Manabu Ishitoko; Yasushi Fukuda; Moon Hee Hwang; Naoki Sakai; Motonari Fukui; Hitoshi Nakaji; Mitsunori Morita; Tadashi Mio; Takehiro Yasuda; Takakazu Sugita; Toyohiro Hirai
Journal:  J Thorac Oncol       Date:  2018-11-20       Impact factor: 15.609

6.  Impact of Baseline Steroids on Efficacy of Programmed Cell Death-1 and Programmed Death-Ligand 1 Blockade in Patients With Non-Small-Cell Lung Cancer.

Authors:  Kathryn C Arbour; Laura Mezquita; Niamh Long; Hira Rizvi; Edouard Auclin; Andy Ni; Gala Martínez-Bernal; Roberto Ferrara; W Victoria Lai; Lizza E L Hendriks; Joshua K Sabari; Caroline Caramella; Andrew J Plodkowski; Darragh Halpenny; Jamie E Chaft; David Planchard; Gregory J Riely; Benjamin Besse; Matthew D Hellmann
Journal:  J Clin Oncol       Date:  2018-08-20       Impact factor: 44.544

7.  New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1).

Authors:  E A Eisenhauer; P Therasse; J Bogaerts; L H Schwartz; D Sargent; R Ford; J Dancey; S Arbuck; S Gwyther; M Mooney; L Rubinstein; L Shankar; L Dodd; R Kaplan; D Lacombe; J Verweij
Journal:  Eur J Cancer       Date:  2009-01       Impact factor: 9.162

8.  Molecular Determinants of Response to Anti-Programmed Cell Death (PD)-1 and Anti-Programmed Death-Ligand 1 (PD-L1) Blockade in Patients With Non-Small-Cell Lung Cancer Profiled With Targeted Next-Generation Sequencing.

Authors:  Hira Rizvi; Francisco Sanchez-Vega; Konnor La; Walid Chatila; Philip Jonsson; Darragh Halpenny; Andrew Plodkowski; Niamh Long; Jennifer L Sauter; Natasha Rekhtman; Travis Hollmann; Kurt A Schalper; Justin F Gainor; Ronglai Shen; Ai Ni; Kathryn C Arbour; Taha Merghoub; Jedd Wolchok; Alexandra Snyder; Jamie E Chaft; Mark G Kris; Charles M Rudin; Nicholas D Socci; Michael F Berger; Barry S Taylor; Ahmet Zehir; David B Solit; Maria E Arcila; Marc Ladanyi; Gregory J Riely; Nikolaus Schultz; Matthew D Hellmann
Journal:  J Clin Oncol       Date:  2018-01-16       Impact factor: 44.544

9.  AACR Project GENIE: Powering Precision Medicine through an International Consortium.

Authors: 
Journal:  Cancer Discov       Date:  2017-06-01       Impact factor: 39.397

10.  Assessment of Deep Natural Language Processing in Ascertaining Oncologic Outcomes From Radiology Reports.

Authors:  Kenneth L Kehl; Haitham Elmarakeby; Mizuki Nishino; Eliezer M Van Allen; Eva M Lepisto; Michael J Hassett; Bruce E Johnson; Deborah Schrag
Journal:  JAMA Oncol       Date:  2019-10-01       Impact factor: 31.777

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  13 in total

1.  Automated NLP Extraction of Clinical Rationale for Treatment Discontinuation in Breast Cancer.

Authors:  Matthew S Alkaitis; Monica N Agrawal; Gregory J Riely; Pedram Razavi; David Sontag
Journal:  JCO Clin Cancer Inform       Date:  2021-05

Review 2.  Artificial intelligence for clinical oncology.

Authors:  Benjamin H Kann; Ahmed Hosny; Hugo J W L Aerts
Journal:  Cancer Cell       Date:  2021-04-29       Impact factor: 38.585

3.  Characterization of a Real-World Response Variable and Comparison with RECIST-Based Response Rates from Clinical Trials in Advanced NSCLC.

Authors:  Xinran Ma; Lawrence Bellomo; Kelly Magee; Caroline S Bennette; Olga Tymejczyk; Meghna Samant; Melisa Tucker; Nathan Nussbaum; Bryan E Bowser; Joshua S Kraut; Ariel Bulua Bourla
Journal:  Adv Ther       Date:  2021-03-05       Impact factor: 3.845

4.  A Support Vector Machine Based on Liquid Immune Profiling Predicts Major Pathological Response to Chemotherapy Plus Anti-PD-1/PD-L1 as a Neoadjuvant Treatment for Patients With Resectable Non-Small Cell Lung Cancer.

Authors:  Jie Peng; Dan Zou; Lijie Han; Zuomin Yin; Xiao Hu
Journal:  Front Immunol       Date:  2021-12-15       Impact factor: 7.561

Review 5.  Artificial intelligence for assisting cancer diagnosis and treatment in the era of precision medicine.

Authors:  Zi-Hang Chen; Li Lin; Chen-Fei Wu; Chao-Feng Li; Rui-Hua Xu; Ying Sun
Journal:  Cancer Commun (Lond)       Date:  2021-10-06

6.  Predicting EGFR and PD-L1 Status in NSCLC Patients Using Multitask AI System Based on CT Images.

Authors:  Chengdi Wang; Jiechao Ma; Jun Shao; Shu Zhang; Zhongnan Liu; Yizhou Yu; Weimin Li
Journal:  Front Immunol       Date:  2022-02-18       Impact factor: 7.561

7.  Deep Learning to Predict EGFR Mutation and PD-L1 Expression Status in Non-Small-Cell Lung Cancer on Computed Tomography Images.

Authors:  Chengdi Wang; Xiuyuan Xu; Jun Shao; Kai Zhou; Kefu Zhao; Yanqi He; Jingwei Li; Jixiang Guo; Zhang Yi; Weimin Li
Journal:  J Oncol       Date:  2021-12-31       Impact factor: 4.375

8.  Clinical Inflection Point Detection on the Basis of EHR Data to Identify Clinical Trial-Ready Patients With Cancer.

Authors:  Kenneth L Kehl; Stefan Groha; Eva M Lepisto; Haitham Elmarakeby; James Lindsay; Alexander Gusev; Eliezer M Van Allen; Michael J Hassett; Deborah Schrag
Journal:  JCO Clin Cancer Inform       Date:  2021-06

9.  Transcriptome Sequencing reveals the expressed profiles of mRNA and ncRNAs and regulate network via ceRNA mediated molecular mechanism of lung adenocarcinoma bone metastasis in Xuanwei.

Authors:  Lei Han; Zhihong Yao; Lin Xie; Dongqi Li; Cao Wang; Yihao Yang; Jifei Yang; Zeyong Huang; Kecheng Li; Ya Zhang; Lijuan Ye; Zunxian Tan; Yan Liu; Qiuyun Chen; Tiying Wang; Zuozhang Yang
Journal:  Transl Cancer Res       Date:  2021-01       Impact factor: 1.241

10.  Correlation Between Surrogate End Points and Overall Survival in a Multi-institutional Clinicogenomic Cohort of Patients With Non-Small Cell Lung or Colorectal Cancer.

Authors:  Kenneth L Kehl; Gregory J Riely; Eva M Lepisto; Jessica A Lavery; Jeremy L Warner; Michele L LeNoue-Newton; Shawn M Sweeney; Julia E Rudolph; Samantha Brown; Celeste Yu; Philippe L Bedard; Deborah Schrag; Katherine S Panageas
Journal:  JAMA Netw Open       Date:  2021-07-01
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