| Literature DB >> 32957930 |
Heléne Lindholm1, India Morrison2, Alexandra Krettek3,4,5, Dan Malm6, Giovanni Novembre2, Linda Handlin7.
Abstract
BACKGROUND: Two important aspects for the development of anxiety disorders are genetic predisposition and alterations in the hypothalamic-pituitary-adrenal (HPA) axis. In order to identify genetic risk-factors for anxiety, the aim of this exploratory study was to investigate possible relationships between genetic polymorphisms in genes important for the regulation and activity of the HPA axis and self-assessed anxiety in healthy individuals.Entities:
Keywords: Anxiety; HPA axis; Polymorphism; STAI; Stress
Mesh:
Substances:
Year: 2020 PMID: 32957930 PMCID: PMC7507731 DOI: 10.1186/s12881-020-01123-w
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Primers and probes used for the analyses of genetic polymorphisms in PCR and ddPCR
| Gene | SNP | Primer Sequence 5′-3′/ | Product (bp) | Polymorphism |
|---|---|---|---|---|
| 5-HTTLPR | F-ATGTCCCTACTGCAGCCTCC | s(396)/l(440) | (s)/(l) | |
| R-AGTCCGCGCGGGATTC | ||||
| rs6295 | F-GGCTGGACTGTTAGATGATAACG | C(163) G(17 & 146) | C/G | |
| R-GGAAGAAGACCGAGTGTGTCAT | ||||
| rs41423247 | CATTTGAACGTAAAATTTTGTTTTGCACCATGTTGACACCAATTCCTCTCTTAAAGAGATT | C/G | ||
| rs1360780 | F-CTGCAAGTCCCCAAAATTTGAC | C/T | ||
| R-ATCTCTTGTGCCAGCAGTAG | ||||
| rs53576 | GTCCCCCACACCTCGGGCACAGCATTCATGGAAAGGAAAGGTGTACGGGACATGCCCGAGG | A/G |
Expected product size in base pairs depending on the polymorphism
SNP Single nucleotide polymorphism, F Forward primer, R Reverse primer, bp Base pairs
Allele and genotype frequencies of the five polymorphisms studied
| Polymorphism | Allele | Allelle frequency | Genotype | Genotype frequency | Hardy-Weinberg Equilibrium |
|---|---|---|---|---|---|
5-HTTLPR | s | 0.451 | s/s | 0.264 | χ2 = 4.26 |
| l | 0.549 | s/l | 0.375 | ||
| l/l | 0.361 | ||||
rs6295 | C | 0.507 | CC | 0.261 | χ2 = 0.01 |
| G | 0.493 | CG | 0.493 | ||
| GG | 0.246 | ||||
rs41423247 | C | 0.364 | CC | 0.086 | χ2 = 2.60, |
| G | 0.636 | CG | 0.557 | ||
| GG | 0.357 | ||||
rs1360780 | C | 0.696 | CC | 0.507 | χ2 = 0.83, |
| T | 0.304 | CT | 0.377 | ||
| TT | 0.116 | ||||
rs53576 | A | 0.357 | AA | 0.072 | χ2 = 2.32, |
| G | 0.643 | AG | 0.551 | ||
| GG | 0.373 |
Fig. 1Associations between the different polymorphisms studied and mean scores (SEM) of STAI-S. * p < 0.01, N/A = only one participant
Fig. 2Associations between the different polymorphisms studied and mean scores (SEM) of STAI-T. * p < 0.01, N/A = only one participant