| Literature DB >> 32953272 |
Sangui Yi1,2, Jihua Zhou1, Liming Lai1, Hui Du1, Qinglin Sun1,2, Liu Yang1,2, Xin Liu1,2, Benben Liu1,2, Yuanrun Zheng1.
Abstract
BACKGROUND: Simulating vegetation distribution is an effective method for identifying vegetation distribution patterns and trends. The primary goal of this study was to determine the best simulation method for a vegetation in an area that is heavily affected by human disturbance.Entities:
Keywords: Important predictor variable; Jing-Jin-Ji region; Vegetation classification unit; Vegetation distribution model
Year: 2020 PMID: 32953272 PMCID: PMC7474518 DOI: 10.7717/peerj.9839
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Figure 1The location and DEM of the Jing-Jin-Ji region.
Classification units of the vegetation of China.
| Vegetation groups (I) | Vegetation types (II) | Formations and sub-formations (III) |
|---|---|---|
| 0. No vegetation | 0 No vegetation | 0 No vegetation |
| 1. Needleleaf forest | 1 Temperate needleleaf forest | 1 |
| 2. Broadleaf forest | 2 Temperate broadleaf deciduous forest | 2 |
| 3 | ||
| 4 | ||
| 5 | ||
| 6 | ||
| 7 | ||
| 8 | ||
| 3. Scrub | 3 Temperate broadleaf deciduous scrub | 9 |
| 10 | ||
| 11 | ||
| 12 | ||
| 13 | ||
| 14 | ||
| 15 | ||
| 4. Steppe | 4 Temperate grass-forb meadow steppe | 16 |
| 17 | ||
| 5 Temperate needlegrass arid steppe | 18 | |
| 19 | ||
| 20 | ||
| 21 | ||
| 5. Grass-forb community | 6 Temperate grass-forb community | 22 |
| 23 | ||
| 24 | ||
| 25 | ||
| 6. Meadow | 7 Temperate grass and forb meadow | 26 |
| 27 | ||
| 8 Temperate grass and forb holophytic meadow | 28 | |
| 29 | ||
| 7. Swamp | 9 Cold-temperate and temperate swamp | 30 |
| 8. Cultural vegetation | 10 One crop annually and cold-resistant economic crops | 31 Spring wheat, naked oats, buckwheat, potatoes; flux |
| 11 One crop annually, cold-resistant economic crops and deciduous orchards | 32 Coarse grains | |
| 12 Three crops two years and two crops annually non irrigation, deciduous orchards | 33 Winter wheat, coarse grains | |
| 34 Coarse grains | ||
| 35 Rice | ||
| 36 Winter wheat, corn, cotton | ||
| 37 Apple, pear orchard | ||
| 38 Winter wheat, corn, Chinese sorghum, sweet potatoes; cotton, tabacco, peanut, sesame; apple, pear, hauthorn, persimmon, walnut, pomegranat, grape | ||
| 39 Winter wheat, coarse grains (loamy soil) |
The vegetation indices.
| Indices | Abbreviation | Formula |
|---|---|---|
| Ratio vegetation index | RVI | NIR/Red |
| Brightness index | BI | 0.2909Blue + 0.2493Green + 0.4806Red + 0.5568NIR + 0.4438SWIR1 + 0.1706SWIR2 |
| Green vegetation index | GI | −0.2728Blue - 0.2174Green-0.5508Red + 0.7221NIR + 0.0733SWIR1 - 0.1648SWIR2 |
| Wetness index | WI | 0.1446Blue + 0.1761Green + 0.3322Red + 0.3396NIR - 0.6210SWIR1 - 0.4186SWIR2 |
| Differenced vegetation index | DVI | NIR - Red |
| Green ratio | GR | NIR/Green |
| Mid-infrared ratio | MR | NIR/SWIR1 |
| Soil-adjusted vegetation index | SAVI | (1.5(NIR - Red))/((NIR + Red + 0.5)) |
| Optimization of soil-adjusted vegetation index | OSAVI | (1.16(NIR - Red))/((NIR + Red + 0.16)) |
| Atmospherically resistant vegetation index | ARVI | (NIR - (2*Red - Blue))/(NIR + (2*Red - Blue)) |
| Normalized difference vegetation index | NDVI | (NIR - Red)/(NIR + Red) |
| Enhanced vegetation index | EVI | 2.5[(NIR - Red)/(NIR + 6*Red - 7.5Blue + 1)] |
| Normalized difference tillage index | NDTI | (SWIR1-SWIR2)/(SWIR1 + SWIR2) |
| Normalized difference senescent vegetation index | NDSVI | (SWIR1-Red)/(SWIR1 + Red) |
Variable combinations.
Note: DT10 and RF10 represent the top 10 important variables of decision tree (DT) and random forest (RF) methods with Combination 9 in the vegetation group level, respectively. The vegetation indices and their abbreviations were shown in Table 2.
| Number | Variables combinations |
|---|---|
| 1 | Summer land surface albedos of band 1 and 5. |
| 2 | Winter land surface albedos of band 1 and 6. |
| 3 | Summer land surface albedos of band 1 and 5. |
| 4 | Summer vegetation indices BI, WI, MR, NDVI, EVI. |
| 5 | Winter vegetation indices MR, NDVI, EVI, NDTI. |
| 6 | Summer vegetation indices BI, WI, MR, NDVI, EVI. |
| 7 | Annual mean temperature, Annual precipitation, Mean diurnal range, Precipitation of driest month. |
| 8 | Slope, Aspect, Annual mean temperature, Annual precipitation, Mean diurnal range, Precipitation of driest month. |
| 9 | Summer land surface albedos of band 1. |
| 10 | DT10: Annual mean temperature, Annual precipitation, Mean diurnal range, Precipitation of driest month, Slope, Winter vegetation indices MR, Summer land surface albedos of band 1, Summer vegetation indices BI and EVI, Winter land surface albedos of band 6. |
| 11 | RF10: Annual precipitation, Annual mean temperature, Mean diurnal range, Slope, Summer vegetation indices BI, MR, NDVI and EVI, Winter vegetation indices MR and NDVI. |
Model assessment of vegetation groups by field point data and VMC.
Variable combinations were shown in Table 3.
| Variable combinations | Decision tree | Random forest | Support vector machine | Maximum likelihood classification | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Point data | VMC | Point data | VMC | Point data | VMC | Point data | VMC | |||||||||
| OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | |
| 1 | 34% | 0.18 | 55% | 0.22 | 37% | 0.24 | 32% | 0.09 | 36% | 0.21 | 53% | 0.21 | 23% | 0.08 | 11% | 0.02 |
| 2 | 38% | 0.20 | 52% | 0.23 | 39% | 0.27 | 37% | 0.13 | 35% | 0.20 | 55% | 0.24 | 18% | 0.07 | 9% | 0.03 |
| 3 | 45% | 0.31 | 54% | 0.26 | 47% | 0.36 | 45% | 0.21 | 41% | 0.27 | 54% | 0.27 | 24% | 0.12 | 15% | 0.05 |
| 4 | 32% | 0.16 | 46% | 0.16 | 42% | 0.30 | 42% | 0.17 | 37% | 0.22 | 57% | 0.26 | 11% | 0.04 | 3% | 0.01 |
| 5 | 31% | 0.11 | 59% | 0.14 | 44% | 0.32 | 44% | 0.19 | 36% | 0.22 | 51% | 0.22 | 9% | 0.04 | 4% | 0.02 |
| 6 | 41% | 0.26 | 44% | 0.18 | 50% | 0.40 | 52% | 0.27 | 42% | 0.29 | 54% | 0.27 | 13% | 0.08 | 4% | 0.03 |
| 7 | 54% | 0.45 | 57% | 0.34 | 72% | 0.66 | 55% | 0.35 | ||||||||
| 8 | 55% | 0.46 | 56% | 0.35 | 69% | 0.63 | 56% | 0.37 | ||||||||
| 9 | 55% | 0.46 | 53% | 0.34 | 68% | 0.61 | 57% | 0.38 | ||||||||
| 10 | 55% | 0.46 | 53% | 0.33 | 69% | 0.63 | 57% | 0.38 | ||||||||
| 11 | 56% | 0.46 | 56% | 0.36 | 68% | 0.62 | 57% | 0.38 | ||||||||
Notes.
VMC, the Vegetation Map of the Peoples Republic of China.
the kappa coefficient lager than 0.56.
the kappa coefficient larger than 0.4 and less than 0.56.
OA, Overall accuracy, KC, Kappa coefficient.
Figure 2The modeling vegetation map of vegetation groups with highest accuracy by four methods and the VMC in Jing-Jin-Ji region.
Decision tree model (A), random forest model (B), support vector machine (C), maximum likelihood classification (D), the Vegetation Map of the People’s Republic of China (VMC) (E). The legend represents vegetation groups shown in Table 1.
Model assessment of vegetation types by field point data and VMC.
Variable combinations were shown in Table 3.
| Variable combinations | Decision tree | Random forest | Support vector machine | Maximum likelihood classification | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Point data | VMC | Point data | VMC | Point data | VMC | Point data | VMC | |||||||||
| OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | |
| 1 | 42% | 0.24 | 63% | 0.33 | 32% | 0.22 | 23% | 0.09 | 32% | 0.18 | 40% | 0.18 | 6% | 0.02 | 7% | 0.00 |
| 2 | 44% | 0.27 | 58% | 0.31 | 34% | 0.23 | 30% | 0.14 | 31% | 0.18 | 44% | 0.24 | 5% | 0.02 | 14% | 0.00 |
| 3 | 43% | 0.30 | 58% | 0.35 | 44% | 0.34 | 38% | 0.22 | 37% | 0.26 | 43% | 0.25 | 9% | 0.05 | 13% | 0.00 |
| 4 | 36% | 0.20 | 47% | 0.20 | 39% | 0.29 | 31% | 0.15 | 32% | 0.19 | 43% | 0.21 | 13% | 0.07 | 6% | 0.02 |
| 5 | 32% | 0.14 | 59% | 0.23 | 41% | 0.31 | 36% | 0.19 | 34% | 0.22 | 43% | 0.22 | 6% | 0.03 | 6% | 0.03 |
| 6 | 36% | 0.23 | 45% | 0.24 | 47% | 0.38 | 44% | 0.27 | 40% | 0.29 | 43% | 0.25 | 14% | 0.09 | 21% | 0.06 |
| 7 | 55% | 0.46 | 72% | 0.54 | 70% | 0.65 | 54% | 0.41 | ||||||||
| 8 | 53% | 0.44 | 68% | 0.52 | 68% | 0.63 | 55% | 0.43 | ||||||||
| 9 | 54% | 0.45 | 65% | 0.49 | 66% | 0.60 | 55% | 0.43 | ||||||||
| 10 | 54% | 0.45 | 65% | 0.49 | 68% | 0.63 | 55% | 0.43 | ||||||||
| 11 | 53% | 0.44 | 68% | 0.52 | 67% | 0.62 | 55% | 0.43 | ||||||||
Notes.
VMC, the Vegetation Map of the Peoples Republic of China.
the kappa coefficient lager than 0.56.
the kappa coefficient larger than 0.4 and less than 0.56.
OA, Overall accuracy, KC, Kappa coefficient.
Figure 3The modeling vegetation map of vegetation types with highest accuracy by four methods and the VMC in Jing-Jin-Ji region.
Decision tree model (A), random forest model (B), support vector machine (C), maximum likelihood classification (D), the Vegetation Map of the People’s Republic of China (VMC) (E). The legend represents vegetation groups shown in Table 1.
Model assessment of formations and subformations by field point data and VMC.
Variable combinations were shown in Table 3.
| Variable combinations | Decision tree | Random forest | Support vector machine | Maximum likelihood classification | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Point data | VMC | Point data | VMC | Point data | VMC | Point data | VMC | |||||||||
| OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | OA | KC | |
| 1 | 23% | 0.14 | 19% | 0.08 | 20% | 0.18 | 5% | 0.02 | 11% | 0.09 | 6% | 0.03 | 8% | 0.06 | 8% | 0.04 |
| 2 | 22% | −0.04 | 49% | 0.04 | 19% | 0.17 | 6% | 0.03 | 13% | 0.11 | 7% | 0.04 | 8% | 0.06 | 13% | 0.05 |
| 3 | 26% | 0.14 | 45% | 0.23 | 29% | 0.27 | 9% | 0.07 | 21% | 0.19 | 10% | 0.07 | 12% | 0.09 | 13% | 0.07 |
| 4 | 30% | 0.20 | 30% | 0.04 | 22% | 0.20 | 7% | 0.04 | 16% | 0.14 | 6% | 0.03 | 9% | 0.07 | 8% | 0.04 |
| 5 | 33% | 0.01 | 67% | 0.00 | 22% | 0.20 | 7% | 0.04 | 15% | 0.13 | 5% | 0.03 | 11% | 0.09 | 10% | 0.04 |
| 6 | 26% | 0.15 | 22% | 0.02 | 31% | 0.30 | 11% | 0.08 | 21% | 0.19 | 8% | 0.06 | 12% | 0.09 | 15% | 0.08 |
| 7 | 33% | 0.20 | 52% | 0.27 | 58% | 0.57 | 23% | 0.20 | ||||||||
| 8 | 27% | 0.17 | 34% | 0.18 | 55% | 0.54 | 23% | 0.20 | ||||||||
| 9 | 25% | 0.15 | 22% | 0.15 | 55% | 0.53 | 22% | 0.20 | ||||||||
| 10 | 30% | 0.17 | 41% | 0.22 | 56% | 0.55 | 23% | 0.21 | ||||||||
| 11 | 31% | 0.20 | 41% | 0.22 | 56% | 0.55 | 23% | 0.20 | ||||||||
Notes.
VMC, the Vegetation Map of the Peoples Republic of China.
the kappa coefficient lager than 0.56.
the kappa coefficient larger than 0.4 and less than 0.56.
OA, Overall accuracy, KC, Kappa coefficient.
Figure 4The modeling vegetation map of formations and sub-formations with highest accuracy by four methods and the VMC in Jing-Jin-Ji region.
Decision tree model (A), random forest model (B), support vector machine (C), maximum likelihood classification (D), the Vegetation Map of the People’s Republic of China (VMC) (E). The legend represents vegetation groups shown in Table 1.
Top ten most important variables of models in the different vegetation classification units.
The abbreviations of indices were shown in Table 2.
| Vegetation groups | Vegetation types | Formations and sub-formations | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Decision tree | Random forest | Decision tree | Random forest | Decision tree | Random forest | |||||||
| Important variables | Standardized Importance | Important variables | Normalized importance | Important variables | Standardized Importance | Important variables | Normalized importance | Important variables | Standardized Importance | Important variables | Normalized importance | |
| 1 | Annual mean temperature | 1.00 | Annual mean temperature | 3.68 | Annual mean temperature | 1.00 | Annual mean temperature | 3.51 | Annual mean temperature | 1.00 | Annual mean temperature | 4.16 |
| 2 | Annual precipitation | 0.88 | Slope | 2.94 | Slope | 0.83 | Slope | 3.35 | Annual precipitation | 0.86 | Annual precipitation | 3.28 |
| 3 | Slope | 0.80 | Mean diurnal range | 2.60 | Annual precipitation | 0.51 | Mean diurnal range | 3.06 | Slope | 0.63 | Mean diurnal range | 3.25 |
| 4 | Winter vegetation index MR | 0.36 | Annual precipitation | 2.38 | Winter vegetation index MR | 0.30 | Annual precipitation | 2.8 | Mean diurnal range | 0.52 | Slope | 2.24 |
| 5 | Mean diurnal range | 0.33 | Summer vegetation index BI | 1.88 | Mean diurnal range | 0.28 | Summer vegetation index BI | 1.84 | Precipitation of driest month | 0.52 | Precipitation of driest month | 2.16 |
| 6 | Summer surface albedo of band 1 | 0.29 | Winter vegetation index NDVI | 1.37 | Summer vegetation index EVI | 0.22 | Winter vegetation index NDVI | 1.61 | Winter vegetation index MR | 0.4 | Summer vegetation index BI | 1.83 |
| 7 | Summer vegetation index BI | 0.28 | Summer vegetation index EVI | 1.36 | Precipitation of driest month | 0.21 | Winter vegetation index MR | 1.45 | Summer surface albedo of band 1 | 0.32 | Summer vegetation index NDVI | 1.7 |
| 8 | Precipitation of driest month | 0.25 | Winter vegetation index MR | 1.30 | Summer vegetation index BI | 0.20 | Summer vegetation index WI | 1.31 | Summer vegetation index BI | 0.32 | Winter vegetation index NDVI | 1.61 |
| 9 | Summer vegetation index EVI | 0.23 | Summer vegetation index NDVI | 1.22 | Summer surface albedo of band 1 | 0.19 | Precipitation of driest month | 1.24 | Summer vegetation index WI | 0.31 | Winter vegetation index MR | 1.47 |
| 10 | Winter surface albedo of band 6 | 0.19 | Summer vegetation index MR | 1.12 | Winter surface albedo of band 6 | 0.14 | Summer vegetation index NDVI | 1.22 | Winter surface albedo of band 6 | 0.28 | Summer vegetation indices EVI and MR | 1.32 |