| Literature DB >> 32948578 |
Amir H Zamanipoor Najafabadi1, Chava L Ramspek2, Friedo W Dekker2, Pauline Heus3, Lotty Hooft4, Karel G M Moons5, Wilco C Peul6,7, Gary S Collins8, Ewout W Steyerberg9, Merel van Diepen2.
Abstract
OBJECTIVES: To assess the difference in completeness of reporting and methodological conduct of published prediction models before and after publication of the Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis (TRIPOD) statement.Entities:
Keywords: epidemiology; general medicine (see internal medicine); statistics & research methods
Mesh:
Year: 2020 PMID: 32948578 PMCID: PMC7511612 DOI: 10.1136/bmjopen-2020-041537
Source DB: PubMed Journal: BMJ Open ISSN: 2044-6055 Impact factor: 2.692
Recommended methods and analyses for the development and validation of prediction models including supportive references
| Methodology | ||
| Handling of missing data | It is generally advised to use multiple imputation for handling of missing data. Complete case analysis, single or mean imputation are inefficient methods to estimate coefficients. | |
| Selection and retaining of predictors in multivariable models | Predictor selection and retaining is preferably based on clinical knowledge and previous literature, instead of significance levels in univariable or stepwise analysis. | |
| Internal validation | It is advised to internally validate the model to assess optimism in performance and reduce overfitting. An efficient method is bootstrapping; split-sample validation should be avoided. | |
| Calibration | It is advised to assess the calibration of a model at external validation. The preferred method is a calibration plot, with intercept and slope, and not statistical tests (eg, Hosmer-Lemeshow), as a plot retains the most information on possible miscalibration. | |
| External validation | External validation of models is needed for rigorous assessment of performance. The preferred external validation population is fully independent. |
Figure 1Flow chart of search results and selection procedure. BMJ, British Medical Journal; JAMA, Journal of the American Medical Association; NEJM, New England Journal of Medicine.
Characteristics of included studies
| Before 2015 | After 2015 | |
| Diagnostic/prognostic | ||
| Diagnostic | 13 (41%) | 4 (11%) |
| Prognostic | 19 (59%) | 34 (89%) |
| Type | ||
| Development | 14 (44%) | 12 (32%) |
| Validation | 4 (13%) | 10 (26%) |
| Development and validation | 10 (31%) | 15 (39%) |
| Update | 4 (13%) | 1 (3%) |
| Setting | ||
| General population and primary care | 18 (56%) | 18 (47%) |
| Secondary care | 14 (44%) | 20 (53%) |
| Design | ||
| Cohort | 26 (81%) | 31 (82%) |
| RCT | 1 (30%) | 4 (11%) |
| Cohort and RCT | 2 (6%) | 3 (8%) |
| Case-control | 3 (9%) | 0 (0%) |
| Topic | ||
| (Cardio)vascular | 12 (38%) | 16 (42%) |
| Oncological | 3 (9%) | 8 (21%) |
| Other | 17 (53%) | 14 (37%) |
RCT, randomised controlled trial.
Figure 2TRIPOD reporting scores. TRIPOD, Transparent Reporting of a multivariable prediction modelfor Individual Prognosis Or Diagnosis.
Figure 3Comparison of used methods in the pre-TRIPOD and post-TRIPOD period. AIC, Akaike Information Criterion; AUC, Area Under the Curve; IDI, Integrated Discrimination Improvement; LR, Likelihood Ratio; NPV, Negative Predictive Value; NRI, Net Reclassification Improvement; PPV, Positive Predictive Value; ROC, Receiver Operating Characteristics; Sens, Sensitivity; Spec, Specificity; TRIPOD, Transparent Reporting of a multivariable prediction modelfor Individual Prognosis Or Diagnosis.