Literature DB >> 32941827

Bilayer compositional asymmetry influences the nanoscopic to macroscopic phase domain size transition.

Naveen Mohideen1, Michael D Weiner2, Gerald W Feigenson3.   

Abstract

The eukaryotic plasma membrane (PM) exhibits lipid mixing heterogeneities known as lipid rafts. These lipid rafts, the result of liquid-liquid phase separation, can be modeled by coexisting liquid ordered (Lo) and liquid disordered (Ld) domains. Four-lipid component systems with a high-melting lipid, a nanodomain-inducing low-melting lipid, a macrodomain-inducing low-melting lipid, and cholesterol (chol) can give rise to domains of different sizes. These four-component systems have been characterized in experiments, yet there are few studies that model the asymmetric distribution of lipids actually found in the PM. We used molecular dynamics (MD) simulations to analyze the transition from nanoscopic to macroscopic domains in symmetric and in asymmetric model membranes. Using coarse-grained MD simulations, we found that asymmetry promotes macroscopic domain growth in a case where symmetric systems exhibit nanoscopic domains. Also, macroscopic domain formation in symmetric systems is highly dependent on registration of like phases in the cytoplasmic and exoplasmic leaflets. Using united-atom MD simulations, we found that symmetric Lo domains are only slightly more ordered than asymmetric Lo domains. We also found that large Lo domains in our asymmetric systems induce a slight chain ordering in the apposed cytoplasmic regions. The chol fractions of phase-separated Lo and Ld domains of the exoplasmic leaflet were unchanged whether the system was symmetric or asymmetric.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Asymmetry; Coarse grained; Lipid domain; Phase separation; Raft; United atom

Mesh:

Substances:

Year:  2020        PMID: 32941827      PMCID: PMC9070412          DOI: 10.1016/j.chemphyslip.2020.104972

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.570


  53 in total

1.  Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.

Authors:  Tsjerk A Wassenaar; Kristyna Pluhackova; Rainer A Böckmann; Siewert J Marrink; D Peter Tieleman
Journal:  J Chem Theory Comput       Date:  2014-01-21       Impact factor: 6.006

2.  GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.

Authors:  Berk Hess; Carsten Kutzner; David van der Spoel; Erik Lindahl
Journal:  J Chem Theory Comput       Date:  2008-03       Impact factor: 6.006

3.  Line Tension Controls Liquid-Disordered + Liquid-Ordered Domain Size Transition in Lipid Bilayers.

Authors:  Rebecca D Usery; Thais A Enoki; Sanjula P Wickramasinghe; Michael D Weiner; Wen-Chyan Tsai; Mary B Kim; Shu Wang; Thomas L Torng; David G Ackerman; Frederick A Heberle; John Katsaras; Gerald W Feigenson
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

4.  Effect of cyclodextrin and membrane lipid structure upon cyclodextrin-lipid interaction.

Authors:  Zhen Huang; Erwin London
Journal:  Langmuir       Date:  2013-11-18       Impact factor: 3.882

5.  Asymmetric supported lipid bilayer formation via methyl-β-cyclodextrin mediated lipid exchange: influence of asymmetry on lipid dynamics and phase behavior.

Authors:  Ilaria Visco; Salvatore Chiantia; Petra Schwille
Journal:  Langmuir       Date:  2014-06-18       Impact factor: 3.882

6.  The asymmetric distribution of phospholipids in the human red cell membrane. A combined study using phospholipases and freeze-etch electron microscopy.

Authors:  A J Verkleij; R F Zwaal; B Roelofsen; P Comfurius; D Kastelijn; L L van Deenen
Journal:  Biochim Biophys Acta       Date:  1973-10-11

7.  On the Calculation of Acyl Chain Order Parameters from Lipid Simulations.

Authors:  Thomas J Piggot; Jane R Allison; Richard B Sessions; Jonathan W Essex
Journal:  J Chem Theory Comput       Date:  2017-10-16       Impact factor: 6.006

8.  Phase separation in a lipid/cholesterol system: comparison of coarse-grained and united-atom simulations.

Authors:  Davit Hakobyan; Andreas Heuer
Journal:  J Phys Chem B       Date:  2013-03-29       Impact factor: 2.991

9.  Asymmetric Bilayers by Hemifusion: Method and Leaflet Behaviors.

Authors:  Thais A Enoki; Gerald W Feigenson
Journal:  Biophys J       Date:  2019-08-21       Impact factor: 4.033

Review 10.  Role of membrane lipid asymmetry in aging.

Authors:  F Schroeder
Journal:  Neurobiol Aging       Date:  1984       Impact factor: 4.673

View more
  2 in total

1.  Molecular substructure of the liquid-ordered phase formed by sphingomyelin and cholesterol: sphingomyelin clusters forming nano-subdomains are a characteristic feature.

Authors:  Michio Murata; Nobuaki Matsumori; Masanao Kinoshita; Erwin London
Journal:  Biophys Rev       Date:  2022-06-11

2.  Model Membrane Systems Used to Study Plasma Membrane Lipid Asymmetry.

Authors:  Haden L Scott; Kristen B Kennison; Thais A Enoki; Milka Doktorova; Jacob J Kinnun; Frederick A Heberle; John Katsaras
Journal:  Symmetry (Basel)       Date:  2021-07-26       Impact factor: 2.940

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.