| Literature DB >> 32939294 |
Keysha T Cordero Giménez1, Victoria Y Soto Díaz1, Jean C González Espiet1, Alexis Lavín Flores1, Jesbaniris Bas Concepción1, Kevin E Rivera Cruz1, Dara L Rodríguez Ayala1, Dalice M Piñero Cruz1.
Abstract
The reaction between [TBA]2[Zn(dmit)2] and 3-chloro-2,4-penta-nedione yielded single crystals of the title compound, (3E,3'E)-3,3'-[(2-sulfanylidene-1,3-dithiole-4,5-diyl)bis(sulfanediyl)]bis(4-hydroxypent-3-en-2-one), C13H14O4S5, after solvent evaporation. The title compound crystallizes in the triclinic space group P with two mol-ecules related by an inversion center present in the unit cell. The central thione ring moiety contains a carbon-carbon double bond covalently linked to two sulfoxide substituents located outside of the plane of the ring. The S-C-C-S torsion angles are -176.18 (8) and -0.54 (18)°. Intra-molecular hydrogen bonds occur within the two dione substituents (1.67-1.69 Å). Adjacent asymmetric units are linked by C-H⋯S (2.89-2.90 Å), S⋯S [3.569 (1) Å] and O⋯H [2.56-2.66 Å between non-stacked thione rings] short contacts. © Cordero Giménez et al. 2020.Entities:
Keywords: crystal structure; dithioles; non-innocent; redox state; tautomerism
Year: 2020 PMID: 32939294 PMCID: PMC7472771 DOI: 10.1107/S2056989020010695
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The title compound with displacement ellipsoids drawn at 50% probability level and hydrogen bonds (O—H⋯O) in the asymmetric unit indicated.
Experimental details
| Crystal data | |
| Chemical formula | C13H14O4S5 |
|
| 394.54 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 100 |
|
| 7.1843 (1), 9.9198 (1), 12.5230 (2) |
| α, β, γ (°) | 84.319 (1), 83.574 (1), 69.151 (1) |
|
| 827.11 (2) |
|
| 2 |
| Radiation type | Cu |
| μ (mm−1) | 6.59 |
| Crystal size (mm) | 0.3 × 0.28 × 0.06 |
| Data collection | |
| Diffractometer | Rigaku SuperNova HyPix3000 |
| Absorption correction | Multi-scan ( |
|
| 0.208, 0.673 |
| No. of measured, independent and observed [ | 45972, 3086, 3034 |
|
| 0.048 |
| (sin θ/λ)max (Å−1) | 0.606 |
| Refinement | |
|
| 0.027, 0.073, 1.05 |
| No. of reflections | 3072 |
| No. of parameters | 206 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.37, −0.31 |
Computer programs: CrysAlis PRO (Rigaku OD, 2015 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
Figure 2Crystal packing of the title compound, indicating the intermolecular O⋯H—C, O⋯C and S⋯C, C—H⋯S and S⋯S short contacts, viewed along the b axis.
C⋯O, S⋯C and S⋯S short contacts (Å)
| C10⋯O1i | 3.178 (2) | S3⋯C5iii | 3.471 (2) |
| C12⋯O4ii | 3.180 (2) | S5⋯S5iv | 3.5688 (6) |
| C13⋯O4ii | 3.219 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O1 | 0.82 | 1.67 | 2.4228 (17) | 151 |
| O4—H4⋯O3 | 0.82 | 1.69 | 2.4406 (17) | 151 |
| C13—H13 | 0.96 | 2.60 | 3.374 (3) | 138 |
| C8—H8 | 0.96 | 2.66 | 3.522 (2) | 150 |
| C8—H8 | 0.96 | 2.66 | 3.612 (2) | 170 |
| C8—H8 | 0.96 | 2.56 | 3.228 (3) | 127 |
| C9—H9 | 0.96 | 2.90 | 3.5184 (19) | 123 |
| C13—H13 | 0.96 | 2.89 | 3.7165 (19) | 144 |
| C4—H4 | 0.96 | 2.90 | 3.7987 (19) | 156 |
Symmetry codes: (iv) ; (v) ; (vi) ; (vii) ; (viii) .
Figure 3Hirshfeld surface of the title compound mapped over d norm with the four main intermolecular contacts in the crystal lattice shown.
Figure 4Full (a) and individual (b)–(m) two-dimensional fingerprint plots showing the ten intermolecular contacts present in the crystal structure.
Figure 5Tautomeric effect observed in the acetylacetonate portion of the title compound.
Figure 61H NMR spectrum of the title compound with inserts of the baseline expansions near 15.4 and 5.1 ppm, respectively.
Figure 7IR spectrum of the title compound.
| C13H14O4S5 | |
| Triclinic, | |
| Cu | |
| Cell parameters from 38605 reflections | |
| θ = 3.6–68.9° | |
| α = 84.319 (1)° | µ = 6.59 mm−1 |
| β = 83.574 (1)° | |
| γ = 69.151 (1)° | Block, light yellow |
| 0.3 × 0.28 × 0.06 mm |
| Rigaku SuperNova HyPix3000 diffractometer | 3034 reflections with |
| ω scans | |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2015) | θmax = 69.1°, θmin = 3.6° |
| 45972 measured reflections | |
| 3086 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3072 reflections | Δρmax = 0.37 e Å−3 |
| 206 parameters | Δρmin = −0.31 e Å−3 |
| 0 restraints | Extinction correction: SHELXL-2016/6 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: dual | Extinction coefficient: 0.0023 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.23650 (6) | 0.66587 (4) | 0.42463 (3) | 0.01782 (12) | |
| S2 | 0.27692 (6) | 0.63562 (4) | 0.65943 (3) | 0.01461 (11) | |
| S3 | 0.31242 (6) | 0.48313 (4) | 0.88104 (3) | 0.01525 (12) | |
| S4 | 0.24878 (6) | 0.21427 (4) | 0.76744 (3) | 0.01430 (11) | |
| S5 | 0.22936 (6) | 0.40181 (4) | 0.55835 (3) | 0.01485 (11) | |
| O1 | 0.58163 (18) | 0.77059 (13) | 0.86405 (10) | 0.0219 (3) | |
| O2 | 0.22982 (18) | 0.89341 (12) | 0.91407 (10) | 0.0208 (3) | |
| H2 | 0.348293 | 0.879765 | 0.896703 | 0.031* | |
| O3 | 0.79489 (17) | −0.06088 (12) | 0.69638 (10) | 0.0204 (3) | |
| O4 | 0.56236 (18) | −0.12438 (12) | 0.60106 (10) | 0.0212 (3) | |
| H4 | 0.667516 | −0.126626 | 0.622140 | 0.032* | |
| C1 | 0.2480 (2) | 0.57110 (16) | 0.54050 (13) | 0.0137 (3) | |
| C2 | 0.2827 (2) | 0.48345 (16) | 0.74276 (13) | 0.0129 (3) | |
| C3 | 0.2616 (2) | 0.37325 (16) | 0.69608 (13) | 0.0129 (3) | |
| C4 | 0.7301 (3) | 0.5227 (2) | 0.83018 (15) | 0.0232 (4) | |
| H4A | 0.728193 | 0.505999 | 0.756173 | 0.035* | |
| H4B | 0.725804 | 0.439335 | 0.874947 | 0.035* | |
| H4C | 0.850316 | 0.540141 | 0.839425 | 0.035* | |
| C5 | 0.5532 (3) | 0.65102 (18) | 0.86127 (13) | 0.0175 (3) | |
| C6 | 0.3570 (2) | 0.64631 (17) | 0.88533 (13) | 0.0146 (3) | |
| C7 | 0.1978 (2) | 0.77374 (18) | 0.91381 (13) | 0.0163 (3) | |
| C8 | −0.0110 (3) | 0.78032 (18) | 0.94305 (15) | 0.0206 (4) | |
| H8A | −0.080210 | 0.861593 | 0.985597 | 0.031* | |
| H8B | −0.010564 | 0.692988 | 0.983764 | 0.031* | |
| H8C | −0.077272 | 0.790640 | 0.878697 | 0.031* | |
| C9 | 0.6980 (3) | 0.13033 (18) | 0.81362 (15) | 0.0213 (4) | |
| H9A | 0.632959 | 0.118292 | 0.883274 | 0.032* | |
| H9B | 0.650861 | 0.230598 | 0.789056 | 0.032* | |
| H9C | 0.839859 | 0.097756 | 0.818419 | 0.032* | |
| C10 | 0.6520 (2) | 0.04366 (17) | 0.73592 (14) | 0.0170 (3) | |
| C11 | 0.4523 (2) | 0.07528 (16) | 0.70716 (13) | 0.0148 (3) | |
| C12 | 0.4160 (2) | −0.01363 (17) | 0.63824 (14) | 0.0168 (3) | |
| C13 | 0.2157 (3) | 0.00525 (18) | 0.60412 (15) | 0.0203 (4) | |
| H13A | 0.231343 | −0.053312 | 0.544829 | 0.030* | |
| H13B | 0.148642 | 0.104954 | 0.582310 | 0.030* | |
| H13C | 0.137979 | −0.023707 | 0.663218 | 0.030* |
| S1 | 0.0235 (2) | 0.0160 (2) | 0.0145 (2) | −0.00766 (16) | −0.00267 (16) | 0.00069 (15) |
| S2 | 0.0234 (2) | 0.00936 (19) | 0.0133 (2) | −0.00776 (15) | −0.00300 (15) | −0.00126 (14) |
| S3 | 0.0252 (2) | 0.0117 (2) | 0.0117 (2) | −0.00935 (15) | −0.00231 (15) | −0.00187 (14) |
| S4 | 0.0192 (2) | 0.00921 (19) | 0.0154 (2) | −0.00658 (15) | 0.00134 (15) | −0.00193 (15) |
| S5 | 0.0223 (2) | 0.01119 (19) | 0.0137 (2) | −0.00800 (15) | −0.00379 (15) | −0.00224 (14) |
| O1 | 0.0268 (6) | 0.0210 (6) | 0.0239 (7) | −0.0153 (5) | −0.0035 (5) | −0.0008 (5) |
| O2 | 0.0266 (6) | 0.0135 (6) | 0.0254 (7) | −0.0100 (5) | −0.0020 (5) | −0.0051 (5) |
| O3 | 0.0195 (6) | 0.0155 (6) | 0.0250 (7) | −0.0051 (5) | −0.0005 (5) | −0.0012 (5) |
| O4 | 0.0227 (6) | 0.0145 (6) | 0.0259 (7) | −0.0046 (5) | −0.0007 (5) | −0.0076 (5) |
| C1 | 0.0137 (7) | 0.0102 (7) | 0.0173 (8) | −0.0036 (6) | −0.0020 (6) | −0.0029 (6) |
| C2 | 0.0153 (7) | 0.0113 (7) | 0.0120 (8) | −0.0046 (6) | −0.0007 (6) | −0.0013 (6) |
| C3 | 0.0161 (7) | 0.0101 (7) | 0.0127 (8) | −0.0047 (6) | −0.0016 (6) | −0.0011 (6) |
| C4 | 0.0216 (8) | 0.0263 (9) | 0.0233 (9) | −0.0089 (7) | −0.0015 (7) | −0.0072 (7) |
| C5 | 0.0247 (8) | 0.0186 (8) | 0.0114 (8) | −0.0096 (7) | −0.0048 (6) | −0.0006 (6) |
| C6 | 0.0223 (8) | 0.0128 (7) | 0.0119 (8) | −0.0093 (6) | −0.0030 (6) | −0.0022 (6) |
| C7 | 0.0256 (8) | 0.0161 (8) | 0.0097 (8) | −0.0093 (7) | −0.0047 (6) | −0.0011 (6) |
| C8 | 0.0224 (8) | 0.0163 (8) | 0.0227 (9) | −0.0061 (7) | −0.0001 (7) | −0.0041 (7) |
| C9 | 0.0256 (9) | 0.0185 (8) | 0.0221 (9) | −0.0089 (7) | −0.0070 (7) | −0.0017 (7) |
| C10 | 0.0237 (8) | 0.0110 (7) | 0.0166 (8) | −0.0076 (6) | −0.0004 (6) | 0.0027 (6) |
| C11 | 0.0194 (8) | 0.0083 (7) | 0.0166 (8) | −0.0055 (6) | 0.0004 (6) | −0.0008 (6) |
| C12 | 0.0236 (8) | 0.0105 (7) | 0.0170 (8) | −0.0079 (6) | 0.0013 (6) | 0.0004 (6) |
| C13 | 0.0246 (8) | 0.0137 (8) | 0.0252 (9) | −0.0091 (7) | −0.0021 (7) | −0.0047 (7) |
| S1—C1 | 1.6424 (17) | C4—H4C | 0.9600 |
| S2—C1 | 1.7389 (16) | C4—C5 | 1.491 (2) |
| S2—C2 | 1.7385 (16) | C5—C6 | 1.424 (2) |
| S3—C2 | 1.7679 (16) | C6—C7 | 1.415 (2) |
| S3—C6 | 1.7653 (16) | C7—C8 | 1.483 (2) |
| S4—C3 | 1.7608 (16) | C8—H8A | 0.9600 |
| S4—C11 | 1.7700 (16) | C8—H8B | 0.9600 |
| S5—C1 | 1.7225 (16) | C8—H8C | 0.9600 |
| S5—C3 | 1.7479 (16) | C9—H9A | 0.9600 |
| O1—C5 | 1.278 (2) | C9—H9B | 0.9600 |
| O2—H2 | 0.8200 | C9—H9C | 0.9600 |
| O2—C7 | 1.287 (2) | C9—C10 | 1.495 (2) |
| O3—C10 | 1.267 (2) | C10—C11 | 1.435 (2) |
| O4—H4 | 0.8200 | C11—C12 | 1.399 (2) |
| O4—C12 | 1.303 (2) | C12—C13 | 1.489 (2) |
| C2—C3 | 1.351 (2) | C13—H13A | 0.9600 |
| C4—H4A | 0.9600 | C13—H13B | 0.9600 |
| C4—H4B | 0.9600 | C13—H13C | 0.9600 |
| C10···O1i | 3.178 (2) | S3···C5iii | 3.471 (2) |
| C12···O4ii | 3.180 (2) | S5···S5iv | 3.5688 (6) |
| C13···O4ii | 3.219 (2) | ||
| C2—S2—C1 | 97.02 (7) | C6—C7—C8 | 123.84 (15) |
| C6—S3—C2 | 101.45 (7) | C7—C8—H8A | 109.5 |
| C3—S4—C11 | 103.72 (7) | C7—C8—H8B | 109.5 |
| C1—S5—C3 | 97.48 (7) | C7—C8—H8C | 109.5 |
| C7—O2—H2 | 109.5 | H8A—C8—H8B | 109.5 |
| C12—O4—H4 | 109.5 | H8A—C8—H8C | 109.5 |
| S1—C1—S2 | 122.31 (9) | H8B—C8—H8C | 109.5 |
| S1—C1—S5 | 124.58 (10) | H9A—C9—H9B | 109.5 |
| S5—C1—S2 | 113.10 (9) | H9A—C9—H9C | 109.5 |
| S2—C2—S3 | 118.79 (9) | H9B—C9—H9C | 109.5 |
| C3—C2—S2 | 116.65 (13) | C10—C9—H9A | 109.5 |
| C3—C2—S3 | 124.56 (13) | C10—C9—H9B | 109.5 |
| S5—C3—S4 | 120.39 (9) | C10—C9—H9C | 109.5 |
| C2—C3—S4 | 123.78 (13) | O3—C10—C9 | 118.05 (15) |
| C2—C3—S5 | 115.69 (12) | O3—C10—C11 | 120.25 (15) |
| H4A—C4—H4B | 109.5 | C11—C10—C9 | 121.69 (14) |
| H4A—C4—H4C | 109.5 | C10—C11—S4 | 120.87 (12) |
| H4B—C4—H4C | 109.5 | C12—C11—S4 | 119.52 (12) |
| C5—C4—H4A | 109.5 | C12—C11—C10 | 119.34 (14) |
| C5—C4—H4B | 109.5 | O4—C12—C11 | 120.13 (15) |
| C5—C4—H4C | 109.5 | O4—C12—C13 | 115.14 (14) |
| O1—C5—C4 | 117.29 (15) | C11—C12—C13 | 124.71 (15) |
| O1—C5—C6 | 119.46 (15) | C12—C13—H13A | 109.5 |
| C6—C5—C4 | 123.24 (15) | C12—C13—H13B | 109.5 |
| C5—C6—S3 | 120.55 (12) | C12—C13—H13C | 109.5 |
| C7—C6—S3 | 120.13 (12) | H13A—C13—H13B | 109.5 |
| C7—C6—C5 | 119.32 (14) | H13A—C13—H13C | 109.5 |
| O2—C7—C6 | 119.97 (15) | H13B—C13—H13C | 109.5 |
| O2—C7—C8 | 116.18 (15) | ||
| S2—C2—C3—S4 | −176.18 (8) | C2—S3—C6—C5 | −84.62 (14) |
| S2—C2—C3—S5 | −0.54 (18) | C2—S3—C6—C7 | 95.98 (14) |
| S3—C2—C3—S4 | 3.1 (2) | C3—S4—C11—C10 | 80.09 (14) |
| S3—C2—C3—S5 | 178.72 (8) | C3—S4—C11—C12 | −105.92 (14) |
| S3—C6—C7—O2 | −178.14 (12) | C3—S5—C1—S1 | 178.43 (11) |
| S3—C6—C7—C8 | 1.0 (2) | C3—S5—C1—S2 | −2.54 (10) |
| S4—C11—C12—O4 | −173.78 (12) | C4—C5—C6—S3 | 0.8 (2) |
| S4—C11—C12—C13 | 4.5 (2) | C4—C5—C6—C7 | −179.82 (15) |
| O1—C5—C6—S3 | 179.45 (12) | C5—C6—C7—O2 | 2.4 (2) |
| O1—C5—C6—C7 | −1.1 (2) | C5—C6—C7—C8 | −178.41 (15) |
| O3—C10—C11—S4 | 176.35 (12) | C6—S3—C2—S2 | −6.57 (11) |
| O3—C10—C11—C12 | 2.3 (2) | C6—S3—C2—C3 | 174.19 (14) |
| C1—S2—C2—S3 | 179.61 (9) | C9—C10—C11—S4 | −2.8 (2) |
| C1—S2—C2—C3 | −1.09 (14) | C9—C10—C11—C12 | −176.84 (15) |
| C1—S5—C3—S4 | 177.69 (10) | C10—C11—C12—O4 | 0.3 (2) |
| C1—S5—C3—C2 | 1.89 (14) | C10—C11—C12—C13 | 178.60 (15) |
| C2—S2—C1—S1 | −178.63 (10) | C11—S4—C3—S5 | 63.50 (11) |
| C2—S2—C1—S5 | 2.31 (10) | C11—S4—C3—C2 | −121.05 (15) |
| H··· | ||||
| O2—H2···O1 | 0.82 | 1.67 | 2.4228 (17) | 151 |
| O4—H4···O3 | 0.82 | 1.69 | 2.4406 (17) | 151 |
| C13—H13 | 0.96 | 2.60 | 3.374 (3) | 138 |
| C8—H8 | 0.96 | 2.66 | 3.522 (2) | 150 |
| C8—H8 | 0.96 | 2.66 | 3.612 (2) | 170 |
| C8—H8 | 0.96 | 2.56 | 3.228 (3) | 127 |
| C9—H9 | 0.96 | 2.90 | 3.5184 (19) | 123 |
| C13—H13 | 0.96 | 2.89 | 3.7165 (19) | 144 |
| C4—H4 | 0.96 | 2.90 | 3.7987 (19) | 156 |
| C1=S1 | 1.6424 (17) |
| C2=C3 | 1.351 (2) |
| S2-C2 | 1.7385 (16) |
| S3-C2 | 1.7679 (16) |
| S5-C3 | 1.7479 (16) |
| S4-C3 | 1.7608 (16) |
| O1=C5 | 1.278 (2) |
| O2-C7 | 1.287 (2) |
| O3=C10 | 1.267 (2) |
| O4-C12 | 1.303 (2) |
| O2-H2 | 0.8200 |
| O4-H4 | 0.8200 |
| S2-C2-S3 | 118.79 (9) |
| S5-C3-S4 | 120.39 (9) |
| C6-S3-C2 | 101.45 (7) |
| C3-S4-C11 | 103.72 (7) |
| C7-C6-C5 | 119.32 (14) |
| C12-C11-C10 | 119.34 (14) |