| Literature DB >> 32936878 |
Colin D Kay1, Michael N Clifford2,3, Pedro Mena4, Gordon J McDougall5, Cristina Andres-Lacueva6,7, Aedin Cassidy8, Daniele Del Rio4, Nikolai Kuhnert9, Claudine Manach10, Gema Pereira-Caro11, Ana Rodriguez-Mateos12, Augustin Scalbert13, Francisco Tomás-Barberán14, Gary Williamson3, David S Wishart15, Alan Crozier16,17.
Abstract
There is a lack of focus on the protective health effects of phytochemicals in dietary guidelines. Although a number of chemical libraries and databases contain dietary phytochemicals belonging to the plant metabolome, they are not entirely relevant to human health because many constituents are extensively metabolized within the body following ingestion. This is especially apparent for the highly abundant dietary (poly)phenols, for which the situation is compounded by confusion regarding their bioavailability and metabolism, partially because of the variety of nomenclatures and trivial names used to describe compounds arising from microbial catabolism in the gastrointestinal tract. This confusion, which is perpetuated in online chemical/metabolite databases, will hinder future discovery of bioactivities and affect the establishment of future dietary guidelines if steps are not taken to overcome these issues. In order to resolve this situation, a nomenclature system for phenolic catabolites and their human phase II metabolites is proposed in this article and the basis of its format outlined. Previous names used in the literature are cited along with the recommended nomenclature, International Union of Pure and Applied Chemistry terminology, and, where appropriate, Chemical Abstracts Service numbers, InChIKey, and accurate mass.Entities:
Keywords: dietary (poly)phenols; food/diet metabolome; microbial catabolites; nomenclature; phase II metabolites
Mesh:
Substances:
Year: 2020 PMID: 32936878 PMCID: PMC7528558 DOI: 10.1093/ajcn/nqaa204
Source DB: PubMed Journal: Am J Clin Nutr ISSN: 0002-9165 Impact factor: 7.045
Examples of recommended nomenclature for (poly)phenols, their microbial catabolites, and human phase II conjugates[1]
| Recommended names[ | Synonyms and incorrect nomenclature | CAS no.[ | IUPAC[ |
|---|---|---|---|
| 1. Benzene diols and triols (C6–C0) | |||
| Benzene-1,2-diol | 1,2-Dihydroxybenzene | 120-80-9 | Benzene-1,2-diol |
| Catechol | (YCIMNLLNPGFGHC-UHFFFAOYSA-N; | ||
| Pyrocatechol | 110.036779 g/mol) | ||
| Brenzcatechin | |||
| Benzene-1,3-diol | 1,3-DihydroxybenzeneResorcinol | 108-46-3 | Benzene-1,3-diol(GHMLBKRAJCXXBS-UHFFFAOYSA-N; 110.036779 g/mol) |
| Benzene-1,2,3-triol | 1,2,3-Trihydroxybenzene | 87-66-1 | Benzene-1,2,3-triol |
| Pyrogallol | (WQGWDDDVZFFDIG-UHFFFAOYSA-N; 126.031694 g/mol) | ||
| Benzene-1,3,5-triol | 1,3,5-Trihydroxybenzene | 108-73-6 | Benzene-1,3,5-triol |
| Phloroglucinol | (QCDYQQDYXPDABM-UHFFFAOYSA-N; 126.031694 g/mol) | ||
| 2. Benzaldehydes (C6–C1) | |||
| 4-Hydroxybenzaldehyde | 4-Formylphenol | 123-08-0 | 4-Hydroxybenzaldehyde (RGHHSNMVTDWUBI-UHFFFAOYSA-N; 122.036779 g/mol) |
| 3,4-Dihydroxybenzaldehyde | Protocatechualdehyde | 139-85-5 | 3,4-Dihydroxybenzaldehyde (IBGBGRVKPALMCQ-UHFFFAOYSA-N; 138.031694 g/mol) |
| 2,4,6-Trihydroxybenzaldehyde | Phloroglucinaldehyde | 487-70-7 | 2,4,6-Trihydroxybenzaldehyde (BTQAJGSMXCDDAJ-UHFFFAOYSA-N; 154.026609 g/mol) |
| 3-Hydroxy-4-methoxybenzaldehyde | Isovanillin | 621-59-0 | 3-Hydroxy-4-methoxybenzaldehyde (JVTZFYYHCGSXJV-UHFFFAOYSA-N; 152.047344 g/mol) |
| 4-Hydroxy-3-methoxybenzaldehyde | 3-Methoxy-4-hydroxybenzaldehyde | 121-33-5 | 4-Hydroxy-3-methoxybenzaldehyde |
| Vanillin | (MWOOGOJBHIARFG-UHFFFAOYSA-N; 152.047344 g/mol) | ||
| 3. Benzoic acids (C6–C1) | |||
| 3-Hydroxybenzoic acid | 3-Hydroxybenzene carboxylic acid | 99-06-9 | 3-Hydroxybenzoic acid (IJFXRHURBJZNAO-UHFFFAOYSA-N; 138.031694 g/mol) |
| 4-Hydroxybenzoic acid | 4-Hydroxybenzene carboxylic acid | 99-96-7 | 4-Hydroxybenzoic acid (FJKROLUGYXJWQN-UHFFFAOYSA-N; 138.031694 g/mol) |
| 2,5-Dihydroxybenzoic acid | Gentisic acid | 490-79-9 | 2,5-Dihydroxybenzoic acid |
| 5-Hydroxy-salicylic acid | (WXTMDXOMEHJXQO-UHFFFAOYSA-N; | ||
| Hydroquinone carboxylic acid | 154.026611 g/mol) | ||
| 3,4-Dihydroxybenzoic acid | Protocatechuic acid | 99-50-3 | 3,4-Dihydroxybenzoic acid (YQUVCSBJEUQKSH-UHFFFAOYSA-N; 154.026609 g/mol) |
| 3,5-Dihydroxybenzoic acid | α-Resorcylic acid | 99-10-5 | 3,5-Dihydroxybenzoic acid (UYEMGAFJOZZIFP-UHFFFAOYSA-N; 154.026609 g/mol) |
| 3,4,5-Trihydroxybenzoic acid | Gallic acid | 149-91-7 | 3,4,5-Trihydroxybenzoic acid (LNTHITQWFMADLM-UHFFFAOYSA-N; 170.021523 g/mol) |
| 2-Amino-5-hydroxybenzoic acid | 5-Hydroxyanthranilic acid | 394-31-0 | 2-Amino-5-hydroxybenzoic acid (HYNQTSZBTIOFKH-UHFFFAOYSA-N; 153.042593 g/mol) |
| Benzoic acid-4-glucuronide | — | — | — |
| Benzoic acid-4-sulfate | — | — | — |
| 3-Hydroxybenzoic acid-4-glucuronide | [ | — | — |
| 4-Hydroxybenzoic acid-3-glucuronide | [ | — | — |
| 3-Hydroxybenzoic acid-4-sulfate | [ | — | — |
| 4-Hydroxybenzoic acid-3-sulfate | [ | — | — |
| 3-Hydroxy-4-methoxybenzoic acid | Isovanillic acid | 645-08-9 | 3-Hydroxy-4-methoxybenzoic acid (LBKFGYZQBSGRHY-UHFFFAOYSA-N; 168.042259 g/mol) |
| 4-Methoxybenzoic acid-3-glucuronide | [ | — | — |
| 4-Methoxybenzoic acid-3-sulfate | [ | — | — |
| 4-Hydroxy-3-methoxybenzoic acid | Vanillic acid | 499-76-3 | 4-Hydroxy-3-methylbenzoic acid (LTFHNKUKQYVHDX-UHFFFAOYSA-N; 152.047344 g/mol) |
| 3-Methoxybenzoic acid-4-glucuronide | [ | — | — |
| 3-Methoxybenzoic acid-4-sulfate | [ | — | — |
| 3,5-Dimethoxy-4-hydroxybenzoic acid | Syringic acid | 530-57-4 | 4-Hydroxy-3,5-dimethoxybenzoic acid (JMSVCTWVEWCHDZ-UHFFFAOYSA-N;198.052823 g/mol) |
| 3,4-Dimethoxybenzoic acid | Veratric acid | 93-07-2 | 3,4-Dimethoxybenzoic acid (DAUAQNGYDSHRET-UHFFFAOYSA-N;182.057909 g/mol) |
| 4. Cinnamic acids (C6–C3 unsaturated)[ | |||
| Cinnamic acid |
| 621-82-9, 140-10-3 | (2 |
| 2′-Hydroxycinnamic acid | 2-Hydroxycinnamic acid[ | 614-60-8 | (2 |
|
| (PMOWTIHVNWZYFI-AATRIKPKSA-N; | ||
|
| 164.047344 g/mol) | ||
|
| |||
| 3-(2-Hydroxyphenyl)acrylic acid | |||
| 3′-Hydroxycinnamic acid | 3-Hydroxycinnamic acid[ | 588-30-7 | (2 |
|
| (KKSDGJDHHZEWEP-SNAWJCMRSA-N; | ||
| 3-Coumaric acid | 164.047344 g/mol) | ||
|
| |||
| 3-(3-Hydroxyphenyl)acrylic acid | |||
| 4′-Hydroxycinnamic acid | 4-Hydroxycinnamic acid[ | 501-98-4 | (2 |
| Coumaric acid | (NGSWKAQJJWESNS-ZZXKWVIFSA-N; | ||
|
| 164.047344 g/mol) | ||
| 4-Coumaric acid | |||
|
| |||
| (4-Hydroxyphenyl)acrylic acid | |||
| 3′,4′-Dihydroxycinnamic acid | 3,4-Dihydroxycinnamic acid[ | 331-39-5, | (2 |
| Caffeic acid | 501-16-6 | (QAIPRVGONGVQAS-DUXPYHPUSA-N; | |
|
| 180.042259 g/mol) | ||
| 3-(3,4-Dihydroxyphenyl)acrylic acid | |||
| Cinnamic acid-4′ | Cinnamic acid-4 | ||
| [p | |||
| 4′-Hydroxy-3′-methoxycinnamic acid | 4-Hydroxy-3-methoxycinnamic acid[ | 537-98-4 | (2 |
|
| 194.057909 g/mol) | ||
| 3-(4-Hydroxy-3-methoxyphenyl)acrylic acid | |||
| 3′-Methoxycinnamic acid-4′-glucuronide | 3-Methoxycinnamic acid-4-glucuronide[ | — | — |
| [ | |||
| 3′-Methoxycinnamic acid-4′-sulfate | 3-Methoxycinnamic acid-4-sulfate[ | — | — |
| [ | |||
| [ | |||
| 3′-Hydroxy-4′-methoxycinnamic acid | 3-Hydroxy-4-methoxycinnamic acid[ | 537-73-5 | (2 |
| Hesperetate | 194.057909 g/mol) | ||
| 3-(3-Hydroxy-4-methoxyphenyl)acrylic acid | |||
| 4′-Methoxycinnamic acid-3′ | 4-Methoxycinnamic acid-3 | — | — |
| [ | |||
| [ | |||
| 4′-Methoxycinnamic acid-3′ | 4-Methoxycinnamic acid-3 | — | — |
| [ | |||
| [ | |||
| 5. Phenylpropanoic acids (C6–C3) | |||
| 3-Phenylpropanoic acid | 3-(Phenyl)propionic acid[ | 501-52-0 | 3-Phenylpropanoic acid (XMIIGOLPHOKFCH-UHFFFAOYSA-N;150.06808 g/mol) |
| 3-(3′-Hydroxyphenyl)propanoic acid | 3-(3-Hydroxyphenyl)propanoic acid[ | 621-54-5 | 3-(3-Hydroxyphenyl)propanoic acid |
| 3-(3-Hydroxyphenyl)propionic acid | (QVWAEZJXDYOKEH-UHFFFAOYSA-N; | ||
| 3-Hydroxy-dihydrocinnamic acid | 166.062994 g/mol) | ||
|
| |||
| 3-(4′-Hydroxyphenyl)propanoic acid | 3-(4-Hydroxyphenyl)propanoic acid[ | 10516-71-9 | 3-(4-Hydroxyphenyl)propanoic acid |
| 3-(4-Hydroxyphenyl)propionic acid | (NMHMNPHRMNGLLB-UHFFFAOYSA-N; | ||
| 4-Hydroxy-dihydrocinnamic acid | 180.078644 g/mol) | ||
|
| |||
| Phloretic acid | |||
| 3-(3′,4′-Dihydroxyphenyl)propanoic acid | 3-(3,4-Dihydroxyphenyl)propanoic acid[ | 1078-61-1 | 3-(3,4-Dihydroxyphenyl)propanoic acid |
| 3-(3,4-Dihydroxyphenyl)propionic acid | (DZAUWHJDUNRCTF-UHFFFAOYSA-N; | ||
| Dihydrocaffeic acid | 182.057909 g/mol) | ||
| 3,4-Dihydroxybenzenepropanoic acid | |||
| 3,4-Dihydroxy-dihydrocinnamic acid | |||
| 3-(3′,5′-Dihydroxyphenyl)propanoic acid | 3-(3,5-Dihydroxyphenyl)propanoic acid[ | 26539-01-5 | 3-(3,5-Dihydroxyphenyl)propanoic acid |
| 3-(3,5-Dihydroxyphenyl)propionic acid | (ITPFIKQWNDGDLG-UHFFFAOYSA-N; | ||
| 3,5-Dihydroxybenzenepropanoic acid | 182.057909 g/mol) | ||
| 3,5-Dihydroxy-dihydrocinnamic acid | |||
| 3-(Phenyl)propanoic acid-4′-glucuronide | 3-(Phenyl)propanoic acid-4-glucuronide[ | — | — |
| 3-(Phenyl)propionic acid-4-glucuronide | |||
| [ | |||
| [p | |||
| 3-(3′-Methoxyphenyl)propanoic acid | 3-(3-Methoxyphenyl)propanoic acid[ | 1798-09-0 | 3-(3-Methoxyphenyl)propanoic acid |
| 3-(3-Methoxyphenyl)propionic acid | (BJJQJLOZWBZEGA-UHFFFAOYSA-N; | ||
| 3-Methoxy-dihydrocinnamic acid | 166.062994 g/mol) | ||
| 3-(4′-Methoxyphenyl)propanoic acid | 3-(4-Methoxyphenyl)propanoic acid[ | 1929-29-9 | 3-(4-Methoxyphenyl)propanoic acid |
| 3-(4-Methoxyphenyl)propionic acid | (FIUFLISGGHNPSM-UHFFFAOYSA-N; | ||
| 4-Methoxy-dihydrocinnamic acid | 180.078644 g/mol) | ||
| 3-(3′-Hydroxy-4′-methoxyphenyl)propanoic acid | 3-(3-Hydroxy-4-methoxyphenyl)propanoic acid[ | 1135-15-5 | 3-(3-Hydroxy-4-methoxyphenyl)propanoic acid |
| Dihydro-isoferulic acid | (ZVIJTQFTLXXGJA-UHFFFAOYSA-N; | ||
| 3-(3-Hydroxy-4-methoxyphenyl)dihydrocinnamic acid | 196.073559 g/mol) | ||
| 3-(4′-Hydroxy-3′-methoxyphenyl)propanoic acid | 3-(4-Hydroxy-3-methoxyphenyl)propanoic acid[ | 1135-23-5 | 3-(4-Hydroxy-3-methoxyphenyl) propanoic acid |
| 3-(4-Hydroxy-3-methoxyphenyl)propionic acid | (BOLQJTPHPSDZHR-UHFFFAOYSA-N; | ||
| Dihydroferulic acid | 196.073559 g/mol) | ||
| 3-(4-Hydroxy-3-methoxyphenyl)dihydrocinnamic acid | |||
| 3-(3′-Hydroxyphenyl)propanoic acid-4′-glucuronide | 3-(3-Hydroxyphenyl)propanoic acid-4-glucuronide[ | — | — |
| 3-(3-Hydroxyphenyl)propionic acid-4-glucuronide | |||
| [ | |||
| [ | |||
| 3-(3′-Hydroxyphenyl)propanoic acid-4′-sulfate | 3-(3-Hydroxyphenyl)propanoic acid-4-sulfate[ | — | — |
| 3-(3-Hydroxyphenyl)propionic acid-4-sulfate | |||
| [ | |||
| [ | |||
| 3-(4′-Hydroxyphenyl)propanoic acid-3′-glucuronide | 3-(4-Hydroxyphenyl)propionic acid-3-glucuronide[ | — | — |
| 3-(4-Hydroxyphenyl)propanoic acid-3-glucuronide | |||
| [ | |||
| [ | |||
| 3-(4′-Hydroxyphenyl)propanoic acid-3′-sulfate | 3-(4-Hydroxyphenyl)propanoic acid-3-sulfate8 | — | — |
| 3-(4-Hydroxyphenyl)propionic acid-3-sulfate | |||
| [ | |||
| [ | |||
| 3-(3′-Methoxyphenyl)propanoic acid-4′-glucuronide | 3-(3-Methoxyphenyl)propanoic acid-4-glucuronide[ | — | — |
| 3-(3-Methoxyphenyl)propionic acid-4-glucuronide | |||
| [ | |||
| [ | |||
| 3-(3′-Methoxyphenyl)propanoic acid-4′-sulfate | 3-(3-Methoxyphenyl)propanoic acid-4-sulfate[ | — | — |
| 3-(3-Methoxyphenyl)propionic acid-4-sulfate | |||
| [ | |||
| [ | |||
| 3-(4′-Methoxyphenyl)propanoic acid-3′-glucuronide | 3-(4-Methoxyphenyl)propanoic acid-3-glucuronide[ | — | — |
| 3-(4-Methoxyphenyl)propionic acid-3-glucuronide | |||
| [ | |||
| 3-(4′-Methoxyphenyl)propanoic acid-3′-sulfate | 3-(4-Methoxyphenyl)propanoic acid-3-sulfate[ | — | — |
| 3-(4-Methoxyphenyl)propionic acid-3-sulfate | |||
| [ | |||
| [ | |||
| 6. Hydroxy-3-(phenyl)propanoic acids (C6–C3)[ | |||
| 3-Hydroxy-3-(phenyl)propanoic acid | 3-(Phenyl)-3-hydroxypropionic acid | 3480-87-3 | 3-Hydroxy-3-phenylpropanoic acid |
| 3-(Phenyl)hydracrylic acid | (AYOLELPCNDVZKZ-UHFFFAOYSA-N;166.062994 g/mol) | ||
| 3-Hydroxy-3-(3′-hydroxyphenyl)propanoic acid | 3-Hydroxy-3-(3-hydroxyphenyl)propanoic acid[ | 3247-75-4 | 3-Hydroxy-3-(3-hydroxyphenyl)propanoic acid |
| 3-(3-Hydroxyphenyl)-3-hydroxypropionic acid | (KHTAGVZHYUZYMF-UHFFFAOYSA-N; | ||
| 3-Hydroxy-3-(3′-hydroxyphenyl)propionic acid | 182.057909 g/mol) | ||
| 3-Hydroxy-3-(3-hydroxyphenyl)propionic acid | |||
| β, | |||
| 3-(3-Hydroxyphenyl)hydracrylic acid | |||
| 3-(3′-Hydroxyphenyl)hydracrylic acid | |||
|
| |||
| 3-Hydroxy-3-(3′-hydroxy-4′-methoxyphenyl)propanoic acid | 3-Hydroxy-3-(3-hydroxy-4-methoxyphenyl)propanoic acid[ | — | 3-Hydroxy-3-(3-hydroxy-4-methoxyphenyl)propanoic acid |
| 3-Hydroxy-3-(3-hydroxy-4-methoxyphenyl)propionic acid | (JEXBTMWMYGBBHO-UHFFFAOYSA-N; | ||
| 3-(3-Hydroxy-4-methoxyphenyl)-3-hydroxypropanoic acid | 212.068473 g/mol) | ||
| 3-(3-Hydroxy-4-methoxyphenyl)-3-hydroxypropionic acid | |||
| 3-(3′-Hydroxy-4′-methoxyphenyl)hydracrylic acid | |||
| 3-(3-Hydroxy-4-methoxyphenyl)hydracrylic acid | |||
| 2-Hydroxy-3-(phenyl)propanoic acid | 3-(Phenyl)-2-hydroxypropanoic acid[ | 828-01-3 | 2-Hydroxy-3-phenylpropionic acid |
| 2-Hydroxy-3-(phenyl)propionic acid | (VOXXWSYKYCBWHO-UHFFFAOYSA-N; | ||
| 3-(Phenyl)-2-hydroxypropionic acid | 166.062994 g/mol) | ||
| 3-(Phenyl)lactic acid | |||
| 2-Hydroxy-3-(4′-hydroxyphenyl)propanoic acid | 2-Hydroxy-3-(4-hydroxyphenyl)propanoic acid[ | 306-23-0 | 2-Hydroxy-3-(4-hydroxyphenyl)propanoic acid |
| 3-(4-Hydroxyphenyl)-2-hydroxypropanoic acid | (JVGVDSSUAVXRDY-UHFFFAOYSA-N; | ||
| 2-Hydroxy-3-(4-hydroxyphenyl)propionic acid | 182.057909 g/mol) | ||
| 3-(4′-Hydroxyphenyl)-2-hydroxypropionic acid | |||
| 3-(4′-Hydroxyphenyl)lactic acid | |||
| 3-(4-Hydroxyphenyl)lactic acid | |||
| 2-Hydroxy-3-(3′,4′-dihydroxyphenyl)propanoic acid | 2-Hydroxy-3-(3,4-dihydroxyphenyl)propanoic acid[ | 23028-17-3 | 3-(3,4-Dihydroxyphenyl)-2-hydroxypropanoic acid |
| 3-(3,4-Dihydroxyphenyl)-2-hydroxypropanoic acid | (PAFLSMZLRSPALU-UHFFFAOYSA-N; | ||
| 2-Hydroxy-3-(3′,4′-dihydroxyphenyl)propionic acid | 198.052823 g/mol) | ||
| 3-(3,4-Dihydroxyphenyl)-2-hydroxypropionic acid | |||
| 3-(3′,4′-Dihydroxyphenyl)lactic acid | |||
| 3-(3,4-Dihydroxyphenyl)lactic acid | |||
| 7. Phenylacetic acids (C6–C2) | |||
| Phenylacetic acid | Phenylethanoic acid | 103-82-2 | 2-Phenylacetic acid |
| 2-Phenylethanoate | (WLJVXDMOQOGPHL-UHFFFAOYSA-N;136.052429 g/mol) | ||
| 3′-Hydroxyphenylacetic acid | 3-Hydroxyphenylacetic acid[ | 621-37-4 | 2-(3-Hydroxyphenyl)acetic acid |
| 3-Hydroxyphenylethanoic acid | (FVMDYYGIDFPZAX-UHFFFAOYSA-N;152.047344 g/mol) | ||
| 3′-Methoxyphenylacetic acid | 3-Methoxyphenylacetic acid[ | 1798-09-0 | 2-(3-Methoxyphenyl)acetic acid |
| 3-Methoxyphenylethanoic acid | (LEGPZHPSIPPYIO-UHFFFAOYSA-N;166.062994 g/mol) | ||
| 4′-Hydroxyphenylacetic acid | 4-Hydroxyphenylacetic acid[ | 156-38-7 | 2-(4-Hydroxyphenyl)acetic acid |
| 4-Hydroxyphenylethanoic acid | (XQXPVVBIMDBYFF-UHFFFAOYSA-N;152.047344 g/mol) | ||
| 3′,4′-Dihydroxyphenylacetic acid | 3,4-Dihydroxyphenylacetic acid[ | 102-32-9 | 2-(3,4-Dihydroxyphenyl)acetic acid |
| 3,4-Dihydroxyphenylethanoic acid | (CFFZDZCDUFSOFZ-UHFFFAOYSA-N; | ||
| Homoprotocatechuic acid | 168.042259 g/mol) | ||
| DOPAC | |||
| 4′-Hydroxy-3′-methoxyphenylacetic acid | 4-Hydroxy-3-methoxyphenylacetic acid[ | 306-08-1 | 2-(4-Hydroxy-3-methoxyphenyl)acetic acid |
| 4-Hydroxy-3-methoxyphanylethanoic acid | (QRMZSPFSDQBLIX-UHFFFAOYSA-N; | ||
| Homovanillic acid | 182.057909 g/mol) | ||
| 8. Hydroxy-2-(phenyl)acetic acids (C6–C2)[ | |||
| 2-Hydroxy-2-(3′-hydroxyphenyl)acetic acid | 2-Hydroxy-2-(3-hydroxyphenyl)acetic acid[ | 17119-15-2 | 2-Hydroxy-2-(3-hydroxyphenyl)acetic acid |
| (3-Hydroxyphenyl)-2-hydroxyacetic acid | (OLSDAJRAVOVKLG-UHFFFAOYSA-N; | ||
| 2-Hydroxy-2-(3-hydroxyphenyl)ethanoic acid | 168.042259 g/mol) | ||
| (3-Hydroxyphenyl)-2-hydroxyethanoic acid | |||
| 3-Hydroxymandelic acid | |||
| 2-Hydroxy-2-(4′-hydroxyphenyl)acetic acid | 2-Hydroxy-2-(4-hydroxyphenyl)acetic acid[ | 1198-84-1 | 2-Hydroxy-2-(4-hydroxyphenyl)acetic acid |
| (4-Hydroxyphenyl)-2-hydroxyacetic acid | (YHXHKYRQLYQUIH-UHFFFAOYSA-N; | ||
| 2-Hydroxy-2-(4′-hydroxyphenyl)ethanoic acid | 168.042259 g/mol) | ||
| (4-Hydroxyphenyl)-2-hydroxyethanoic acid | |||
| 4′-Hydroxymandelic acid | |||
| 4-Hydroxymandelic acid | |||
| 4-Hydroxy- | |||
| 4-Hydroxy- | |||
| 2-Hydroxy-2-(4′-hydroxy-3′-methoxyphenyl)acetic acid | 2-Hydroxy-2-(4-hydroxy-3-methoxyphenyl)acetic acid[ | 2394-20-9, | 2-Hydroxy-2-(4-hydroxy-3-methoxyphenyl)acetic acid |
| (4-Hydroxy-3-methoxyphenyl)-2-hydroxyacetic acid | 55-10-7 | (CGQCWMIAEPEHNQ-UHFFFAOYSA-N; | |
| 2-Hydroxy-2-(4-hydroxy-3-methoxyphenyl)ethanoic acid | 198.052823 g/mol) | ||
| (4-Hydroxy-3-methoxyphenyl)-2-hydroxyethanoic acid | |||
| 4′-Hydroxy-3′-methoxymandelic acid | |||
| 4-Hydroxy-3-methoxymandelic acid | |||
| 3-Methoxy-4-hydroxymandelic acid | |||
| 4-Hydroxy-3-methoxy- | |||
| Vanillylmandelic acid | |||
| 9. Hippuric acids (C6–C2–N) | |||
| Hippuric acid | — | 495-69-2 | 2-Benzamidoacetic acid (QIAFMBKCNZACKA-UHFFFAOYSA-N;179.058243 g/mol) |
| 2′-Hydroxyhippuric acid | 2-Hydroxyhippuric acid[ | 487-54-7 | 2-[(2-Hydroxybenzoyl)amino]acetic acid |
| 2-(2-Hydroxybenzamido)acetic acid | (ONJSZLXSECQROL-UHFFFAOYSA-N; | ||
|
| 195.053158 g/mol) | ||
| Salicyluric acid | |||
| 3′-Hydroxyhippuric acid | 3-Hydroxyhippuric acid[ | 1637-75-8 | 2-[(3-Hydroxybenzoyl)amino]acetic acid |
| 2-(3-Hydroxybenzamido)acetic acid | (XDOFWFNMYJRHEW-UHFFFAOYSA-N; | ||
|
| 195.053158 g/mol) | ||
| 4′-Hydroxhippuric acid | 4-Hydroxyhippuric acid[ | 2482-25-9 | 2-[(4-Hydroxybenzoyl)amino]acetic acid |
| 2-(4-Hydroxybenzamido)acetic acid | (ZMHLUFWWWPBTIU-UHFFFAOYSA-N; | ||
|
| 195.053158 g/mol) | ||
| 4′-Methoxyhippuric acid | 4-Methoxyhippuric acid[ | — | 2-[(4-Methoxybenzoyl)amino]acetic acid |
| 2-(4-Ethoxybenzamido)acetic acid | (SIEIOUWSTGWJGE-UHFFFAOYSA-N; | ||
|
| 209.068808 g/mol) | ||
| 10. Phenyl-γ-valerolactones (C6–C5) | |||
| 5-(3′,4′-Dihydroxyphenyl)-γ-valerolactone | 5-(3,4-Dihydroxyphenyl)-γ-valerolactone[ | 21618-92-8 | 5-[(3,4-Dihydroxyphenyl)methyl]oxolan-2-one |
| δ-(3,4-Dihydroxyphenyl)-γ-valerolactone5-(Dihydroxyphenyl)-γ-valerolactone | 1108192-01-3 (4 | (ZNXXWTPQHVLMQT-UHFFFAOYSA-N; 208.073559 g/mol)[ | |
| 5-(Dihydroxyphenyl)-valerolactone | 191666-22-5 | ||
| [ | (4 | ||
| 5-(4′-Hydroxyphenyl)-γ-valerolactone-3′-glucuronide | 5-(4-Hydroxyphenyl)-γ-valerolactone-3-glucuronide[ | — | 3,4,5-Trihydroxy-6-[2-hydroxy-5-[(5-oxooxolan-2-yl)methyl]phenoxy]oxane-2-carboxylic acid (UVGDTVGPBRLMQY-UHFFFAOYSA-N;384.105647 g/mol) |
| 5-(3′-Hydroxyphenyl)-γ-valerolactone-4′-glucuronide | 5-(3-Hydroxyphenyl)-γ-valerolactone-4-glucuronide[ | — | 3,4,5-Trihydroxy-6-{2-hydroxy-4-[(5-oxooxolan-2-yl)methyl]phenoxy}oxane-2-carboxylic acid (OTBJYBQGMPICIK-UHFFFAOYSA-N;384.105647 g/mol)[ |
| 5-(4′-Hydroxyphenyl)-γ-valerolactone-3′-sulfate | 5-(4-Hydroxyphenyl)-γ-valerolactone-3-sulfate[ | — | [2-Hydroxy-5-[(5-oxooxolan-2-yl)methyl]phenyl] hydrogen sulfate |
| [ | (YAXFVDUJDAQPTJ-UHFFFAOYSA-N; 288.030374 g/mol) | ||
| 5-(3′-Hydroxyphenyl)-γ-valerolactone-4′-sulfate | 5-(3-Hydroxyphenyl)-γ-valerolactone-4-sulfate[ | — | [2-Hydroxy-4-[(5-oxooxolan-2-yl)methyl]phenyl] hydrogen sulfate |
| [ | (WAXYAOJFDCCESK-UHFFFAOYSA-N; 288.030374 g/mol) | ||
| 5-(3′-Methoxyphenyl)-γ-valerolactone-4′-sulfate | 5-(3-Methoxyphenyl)-γ-valerolactone-4-sulfate[ | — | [2-Methoxy-4-[(5-oxooxolan-2-yl)methyl]phenyl] hydrogen sulfate |
| [ | (FYRRHCSCZYSADR-UHFFFAOYSA-N; | ||
| [ | 302.046024 g/mol) | ||
| 5-(3′-Methoxyphenyl)-γ-valerolactone-4′-glucuronide | 5-(3-Methoxyphenyl)-γ-valerolactone-4-glucuronide[ | — | 3,4,5-Trihydroxy-6-[2-methoxy-4-[(5-oxooxolan-2-yl)methyl]phenoxy]oxane-2-carboxylic acid (NGMVEYPQYAIGEI-UHFFFAOYSA-N; 398.121297 g/mol) |
| 5-(Phenyl)-γ-valerolactone-3′-sulfate-4′-glucuronide | 5-(Phenyl)-γ-valerolactone-3-sulfate-4-glucuronide[ | — | — |
| [ | |||
| [5-( | |||
| 11. 4-Hydroxy-5-(phenyl)valeric acids (C6–C5)[ | |||
| 4-Hydroxy-5-(3′,4′-dihydroxyphenyl)valeric acid | 4-Hydroxy-5-(3,4-dihydroxyphenyl)valeric acid[ | — | 5-(3,4-Dihydroxyphenyl)-4-hydroxypentanoic acid (JDBYFCLHVYVXCX-UHFFFAOYSA-N; 226.084124 g/mol) |
| 5-(3,4-Dihydroxyphenyl)-4-hydroxypentanoic acid | |||
| [ | |||
| [ | |||
| 4-Hydroxy-5-(4′-hydroxyphenyl)valeric acid-3′-glucuronide | 4-Hydroxy-5-(4-hydroxyphenyl)valeric acid-3-glucuronide[ | — | 6-[5-(4-Carboxy-2-hydroxybutyl)-2-hydroxyphenoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (BKJQCPDRWDNBIN-UHFFFAOYSA-N; |
| 5-(4-Hydroxyphenyl)-4-hydroxypentanoic acid-3-glucuronide | 402.116212 g/mol) | ||
| [ | |||
| 4-Hydroxy-5-(3′-hydroxyphenyl)valeric acid-4′-glucuronide | 4-Hydroxy-5-(3-hydroxyphenyl)valeric acid-4-glucuronide[ | — | 6-[4-(4-Carboxy-2-hydroxybutyl)-2-hydroxyphenoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (LLKUARGHNZMSRT-UHFFFAOYSA-N; |
| 5-(4-Hydroxyphenyl)-4-hydroxyvaleric acid-4-glucuronide | 402.116212 g/mol) | ||
| [ | |||
| 4-Hydroxy-5-(4′-hydroxyphenyl)valeric acid-3′-sulfate | 4-Hydroxy-5-(4-hydroxyphenyl)valeric acid-3-sulfate[ | — | 4-Hydroxy-5-(4-hydroxy-3-sulfooxyphenyl)pentanoic acid (HROSNTXKMPHTSL-UHFFFAOYSA-N; 306.040939 g/mol) |
| 5-(4-Hydroxyphenyl)-4-hydroxypentanoic acid-3-sulfate | |||
| [ | |||
| 4-Hydroxy-5-(3′-hydroxyphenyl)valeric acid-4′-sulfate | 4-Hydroxy-5-(3-hydroxyphenyl)valeric acid-4-sulfate[ | — | — |
| 5-(3-Hydroxyphenyl)-4-hydroxyvaleric acid-4-sulfate | |||
| 4-Hydroxy-5-(3-hydroxyphenyl)pentanoic acid-4-sulfate | |||
| 5-(3-Hydroxyphenyl)-4-hydroxypentanoic acid-4-sulfate | |||
| [ | |||
| 4-Sulfoxy-5-(3′,4′-dihydroxyphenyl)valeric acid | 4-Sulfoxy-5-(3,4-dihydroxyphenyl)valeric acid[ | — | 5-(3,4-Dihydroxyphenyl)-4-sulfooxypentanoic acid |
| 5-(3,4-Dihydroxyphenyl)-4-sulfoxyvaleric acid | (NBKHZVHBUVNGQF-UHFFFAOYSA-N; | ||
| 4-Sulfoxy-5-(3,4-dihydroxyphenyl)pentanoic acid | 306.040939 g/mol) | ||
| 5-(3,4-Dihydroxyphenyl)-4-sulfoxypentanoic acid | |||
| [ | |||
| 4-Hydroxy-5-(3′-methoxyphenyl)valeric acid-4′-sulfate | 4-Hydroxy-5-(3-methoxyphenyl)valeric acid-4-sulfate[ | — | 4-Hydroxy-5-[3-methoxy-4-(sulfooxy)phenyl]pentanoic acid |
| 5-(3-Methoxyphenyl)-4-hydroxyvaleric acid-4-sulfate | (GUEAZORXKKSCMA-UHFFFAOYSA-N; | ||
| 4-Hydroxy-5-(3-methoxyphenyl)pentanoic acid-4-sulfate | 320.056589 g/mol) | ||
| 5-(3-Methoxyphenyl)-4-hydroxypentanoic acid-4-sulfate | |||
| [ | |||
| 4-Hydroxy-5-(4′-methoxyphenyl)valeric acid-3′-sulfate | 4-Hydroxy-5-(4-methoxyphenyl)valeric acid-3-sulfate[ | — | — |
| 5-(4-Methoxyphenyl)-4-hydroxyvaleric acid-3-sulfate | |||
| 4-Hydroxy-5-(4′-methoxyphenyl)pentanoic acid-3′-sulfate | |||
| 5-(4-Methoxyphenyl)-4-hydroxpentanoic acid-3-sulfate | |||
| [ | |||
| 4-Sulfoxy-5-(4′-hydroxy-3′-methoxyphenyl)valeric acid | 4-Sulfoxy-5-(4-hydroxy-3-methoxyphenyl)valeric acid[ | — | 5-(4-Hydroxy-3-methoxyphenyl)-4-(sulfooxy)pentanoic acid |
| 5-(4-Hydroxy-3-methoxyphenyl)-4-sulfoxyvaleric acid | (JQISKEAFUDWLCF-UHFFFAOYSA-N; | ||
| 4-Sulfoxy-5-(4-hydroxy-3-methoxyphenyl)pentanoic acid | 320.056589 g/mol) | ||
| 5-(4-Hydroxy-3-methoxyphenyl)-4-sulfoxypentanoic acid | |||
| [ | |||
| 4-Hydroxy-5-(3′-methoxyphenyl)valeric acid-4′-glucuronide | 4-Hydroxy-5-(3-methoxyphenyl)valeric acid-4- glucuronide[ | — | 6-[4-(4-Carboxy-2-hydroxybutyl)-2-methoxyphenoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid (WOBDOUCWWPCYBL-UHFFFAOYSA-N; |
| 5-(3′-Methoxyphenyl)-4-hydroxypentanoic acid-4-glucuronide | 416.131862 g/mol) | ||
| [ | |||
| 12. 5-Phenylvaleric acids (C6–C5) | |||
| 5-(3′,5′-Dihydroxyphenyl)valeric acid | 5-(3,5-Dihydroxyphenyl)valeric acid[ | 74356-41-5 | 5-(3,5-Dihydroxyphenyl)pentanoic acid |
| 5-(3,5-Dihydroxyphenyl)pentanoic acid | (QHXNJIMVPAFCPR-UHFFFAOYSA-N; | ||
| [ | 210.089203 g/mol) | ||
| [ | |||
| 5-(3′,4′,5′-Trihydroxyphenyl)valeric acid | 5-(3,4,5-Trihydroxyphenyl)valeric acid[ | — | 5-(3,4,5-Trihydroxyphenyl)pentanoic acid |
| 5-(3,4,5-Trihydroxyphenyl)pentanoic acid | (MASHJJSDLKLZLA-UHFFFAOYSA-N; | ||
| [ | 226.084124 g/mol) | ||
| [ | |||
| 13. Urolithins (6H-Dibenzo[b,d]pyran-6-one) | |||
| 3-Hydroxy-urolithin | Urolithin B | 1139-83-9 | 3-Hydroxy-6H-benzo[c]chromen-6-one (WXUQMTRHPNOXBV-UHFFFAOYSA-N; 212.047344 g/mol) |
| Urolithin-3-glucuronide | Urolithin B-3-glucuronide[ | 823806-74-2 | (2 |
| Urolithin-3-sulfate | Urolithin B-3-sulfate | — | (6-Oxobenzo[c]chromen-3-yl) hydrogen sulfate |
| [ | (LRRVKQQFGIEMSA-UHFFFAOYSA-N; 292.004159 g/mol) | ||
| 3,8-Dihydroxy-urolithin | Urolithin A | 1143-70-0 | 3,8-Dihydroxy-6H-benzo[c]chromen-6-one (RIUPLDUFZCXCHM-UHFFFAOYSA-N; 228.042259 g/mol) |
| 8-Hydroxy-urolithin-3-glucuronide | Urolithin A-3-glucuronide[ | — | 3,4,5-Trihydroxy-6-(8-hydroxy-6-oxo-6H-benzo[c]chromen-3-yl)oxyoxane-2-carboxylic acid (KXBXNRJGUDTJQS-UHFFFAOYSA-N; 404.074347 g/mol) |
| 3-Hydroxy-urolithin-8-glucuronide | Urolithin A-8-glucuronide[ | 1365982-52-0 | (2 |
| Urolithin-3,8-diglucuronide | Urolithin A-3,8-diglucuronide[ | — | (2 |
| 8-Hydroxy-urolithin-3-sulfate | Urolithin A-3-sulfate | — | (8-Hydroxy-6-oxobenzo[c]chromen-3-yl) hydrogen sulfate |
| [ | (WMPNAWQWWZFJTQ-UHFFFAOYSA-N; | ||
| [ | 307.999074 g/mol) | ||
| 3-Hydroxy-urolithin-8-sulfate | Urolithin A-8-sulfate[ | (3-Hydroxy-6-oxo-6H-benzo[c]chromen-8-yl)oxidanesulfonic acid | |
| Urolithin-3-sulfate-8-glucuronide | [ | — | — |
| [ | |||
| 3,9-Dihydroxy-urolithin | Isourolithin A | 174023-48-4 | 3,9-Dihydroxy-6H-benzo[c]chromen-6-one (WDGSXHQNUPZEHA-UHFFFAOYSA-N; 228.042259 g/mol) |
| 9-Hydroxy-urolithin-3-glucuronide | Isourolithin A-3-glucuronide | — | — |
| [ | |||
| [ | |||
| 3-Hydroxy-urolithin-9-glucuronide | Isourolithin A-9-glucuronide | — | — |
| [ | |||
| [ | |||
| 3,8,9-Trihydroxy-urolithin | Urolithin C | 165393-06-6 | 3,8,9-Trihydroxy-6H-benzo[c]chromen-6-one |
| [ | (HHXMEXZVPJFAIJ-UHFFFAOYSA-N; | ||
| [ | 244.037173 g/mol) | ||
| 8,9-Dihydroxy-urolithin-3-glucuronide | Urolithin C-3-glucuronide[ | 1268248-76-5 | (2 |
| 3,4,8,9-Tetrahydroxy-urolithin | Urolithin D | 131086-98-1 | 3,4,8,9-Tetrahydroxy-6H-benzo[c]chromen-6-one (NEZDQSKPNPRYAW-UHFFFAOYSA-N; 260.032088 g/mol) |
| 3,8,9,10-Tetrahydroxy-urolithin | Urolithin M6 | 1006683-97-1 | 3,8,9,10-Tetrahydroxy-6H-benzo[c]chromen-6-one (LGXFTZDSEIQMMP-UHFFFAOYSA-N; 260.032088 g/mol) |
| 3,8,10-Trihydroxy-urolithin | Urolithin M7 | 531512-26-2 | 3,8,10-Trihydroxy-6H-benzo[c]chromen-6-one (AKJHSPSPAOUDFT-UHFFFAOYSA-N; 244.037173 g/mol) |
| 14. Others (C6–C2) | |||
| 2-(3′-Hydroxyphenyl)ethanol | 2-(3-Hydroxyphenyl)ethanol[ | 10597-60-1 | 4-(2-Hydroxyethyl)-1,2-benzenediol |
| 3-Hydroxytyrosol | (JUUBCHWRXWPFFH-UHFFFAOYSA-N; | ||
| 3,4-Dihydroxyphenylethanol | 154.062994 g/mol) | ||
| 3,4-Dihydroxyphenethyl alcohol | |||
| 2-(3′,4′-Dihydroxyphenyl)ethanol | 4-Hydroxyphenethyl alcohol[ | 501-94-0 | 4-(2-Hydroxyethyl)phenol (YCCILVSKPBXVIP-UHFFFAOYSA-N; 138.06808 g/mol) |
This table was established based on cross-referencing the following databases: PubChem (https://pubchem.ncbi.nlm.nih.gov), NIST Chemistry WebBook (https://webbook.nist.gov), ChemIDPlus (https://chem.nlm.nih.gov/chemidplus), HMDB (http://www.hmdb.ca), ChemSpider (http://www.chemspider.com), ChemicalBook (https://www.chemicalbook.com), and ChEMBL (https://www.ebi.ac.uk). Column 1, proposed nomenclature; column 2, equally accurate alternative “nonprime” nomenclature indicated by superscript 8, followed by common or trivial names, and, finally, often reported inaccurate nomenclature shown in italics and brackets. Table 1 is available for download (Excel file; ). CAS-RN, Chemical Abstracts Service Registry Number; DOPAC, 3′,4′-dihydroxyphenylacetic acid; IUPAC, International Union of Pure and Applied Chemistry.
Glucuronic acid–oxygen conjugations are of β-d-configuration.
Column 2 contains synonyms along with incorrect nomenclature that are in brackets. Both should be avoided to prevent further confusion in the literature and in online databases.
CAS Registry Number (CAS-RN) is a numeric identifier that can contain ≤10 digits, divided by hyphens into 3 parts, and each number is a unique numeric identifier that can link to information about the substance to which it refers, but it has no chemical significance per se (see https://www.cas.org/support/documentation/chemical-substances). Not all compounds have a CAS number, typically because they have a limited or no commercial source.
The IUPAC is described as the world authority on chemical nomenclature and terminology (https://iupac.org/who-we-are).
InChIKey: IUPAC standard textual unique chemical identifier.
Cinnamic acids have cis (Z) and trans (E) geometric isomers. In nature, the trans isomer is more common.
Alternative “nonprime” nomenclatre.
Compounds that occur as R- and S-isomers.
In rare instances, compounds appear to have 2 different InChIKey formulas in online databases which are generally associated with different CAS or registry numbers and possibly reflect uncharacterized isomeric configuration. For example, 5-(3′,4′-dihydroxyphenyl)-γ-valerolactone or IUPAC 5-[(3,4-dihydroxyphenyl)methyl]oxolan-2-one is listed as having 2 different CAS RNs: 21618-92-8 and 191666-22-5; 2 different standard 27-character InchiKeys: ZNXXWTPQHVLMQT-UHFFFAOYSA-N and ZNXXWTPQHVLMQT-MRVPVSSYSA-N; and sharing the same simplified molecular-input line-entry system (SMILES) formula: C1CC(=O)OC1CC2=CC(=C(C=C2)O)O. In this case, each structure has a unique full InChI (using the SHA-256 algorithm): InChI=1S/C11H12O4/c12-9-3-1-7(6-10(9)13)5-8-2-4-11(14)15-8/h1,3,6,8,12-13H,2,4-5H2 and 1S/C11H12O4/c12-9-3-1-7(6-10(9)13)5-8-2-4-11(14)15-8/h1,3,6,8,12-13H,2,4-5H2/t8-/m1/s1, which should be used in cases in which 2 isomers require distinction. Similarly, 5-(3′-hydroxyphenyl)-γ-valerolactone-4′-glucuronide or IUPAC 3,4,5-trihydroxy-6-{2-hydroxy-4-[(5-oxooxolan-2-yl)methyl]phenoxy}oxane-2-carboxylic acid has two different standard InChIKeys—OTBJYBQGMPICIK-UHFFFAOYSA-N and OTBJYBQGMPICIK-GHPVWUPISA-N—and different simplified molecular-input line-entry system (SMILES) formula and full InChIKey.
FIGURE 1Numbering of the phenolic ring and its side chain with the current practice (A) and the older less fashionable use of lowercase Greek letters for the side chain (B).
FIGURE 2Nomenclature of metabolites involved in the microbial conversion of C6–C5 to C6–C3 and C6–C1.
FIGURE 3An illustration of how numbering of substituents may change during catabolism.
FIGURE 4Structure of 5-(3′,4′,5′-trihydroxyphenyl)-γ-valerolactone.
FIGURE 5Urolithin nomenclature based on Gonzalez-Barrio et al. (15).
FIGURE 6C6–C3 compounds with 2 hydroxyl groups and an exact mass of 182.0579 Da. 1a, b, 3R/S-hydroxy-3-(2′-hydroxyphenyl)propanoic acid; 2a, b, 3R/S-hydroxy-3-(3′-hydroxyphenyl)propanoic acid; 3a, b, 3R/S-hydroxy-3-(4′-hydroxyphenyl)propanoic acid; 4a, b, 2R/S-hydroxymethyl-2-(2′-hydroxyphenyl)acetic acid; 5a, b, 2R/S-hydroxymethyl-2-(3′-hydroxyphenyl)acetic acid; 6a, b, 2R/S-hydroxymethyl-2-(4′-hydroxyphenyl)acetic acid; 7, 3-(2′,3′-dihydroxyphenyl)propanoic acid; 8, 3-(2′,4′-dihydroxyphenyl)propanoic acid; 9, 3-(3′,4′-dihydroxyphenyl)propanoic acid; 10, 3-(2′,5′-dihydroxyphenyl)propanoic acid; 11, 3-(3′,5′-dihydroxyphenyl)propanoic acid; 12a, b, 2R/S-hydroxy-3-(2′-hydroxyphenyl)propanoic acid; 13a, b, 2R/S-hydroxy-3-(3′-hydroxyphenyl)propanoic acid; 14a, b, 2R/S-hydroxy-3-(4′-hydroxyphenyl)propanoic acid; 15a–d, 2R/S,3R/S-dihydroxy-3-(phenyl)propanoic acid.